View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_35 (Length: 236)
Name: NF0661_low_35
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 16373500 - 16373284
Alignment:
| Q |
17 |
tatatagttatggacctatttgattggatacaaactttatgaagtccgaataaaaacggtatattaacacccccttagaagtttcgtctcactttacata |
116 |
Q |
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| T |
16373500 |
tatatagttatggacctatttgattggatacaaactttatgaagtccgaatgaaaacg-tatattaacacccccttaaaagtttcgtctcactttacata |
16373402 |
T |
|
| Q |
117 |
acatatacattaattaaaatgtggttaaataaattgttaagtcattctagttcaaacttttattcatttaagttttacaacttaaccaaaagaaatgttt |
216 |
Q |
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||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |
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| T |
16373401 |
acaaagacattaattaaaatgcggttaaataaattgttaagtcattctagttcaaacttttattcatttaagttttaaaacgtaaccaaaaaaaatgttt |
16373302 |
T |
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| Q |
217 |
ctttctatccattttaaa |
234 |
Q |
| |
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|||||||||||||||||| |
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| T |
16373301 |
ctttctatccattttaaa |
16373284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 17906550 - 17906767
Alignment:
| Q |
17 |
tatatagttatggacctatttgattggatacaaactttatgaagtccgaataaaaacggtatattaacacccccttagaagtttcgtctcactttacata |
116 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
17906550 |
tatatacttatggacctatttgattggatacaaattttatgaagtccgaatgaaaacggtatattaacaccctcttagaagtttcgtctcactttacgta |
17906649 |
T |
|
| Q |
117 |
acatatacattaattaaaatgtggttaaataaattgttaagtcattctagttcaaacttttattcatttaagttttacaacttaaccaaaagaaatgttt |
216 |
Q |
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| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
17906650 |
ataaagacattaattaaaatgtggttaaataaattgttaagtcattctagttcaaacttttattcatttaagttttacaacgtaaccaaaaaaaatgttt |
17906749 |
T |
|
| Q |
217 |
ctttctatccattttaaa |
234 |
Q |
| |
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|||||||||||||||||| |
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| T |
17906750 |
ctttctatccattttaaa |
17906767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 12641265 - 12641455
Alignment:
| Q |
17 |
tatatagttatggacctatttgattggatacaaactttatgaagtccgaataaaaacggtatattaacacccccttagaagtttcgtctcactttacata |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
12641265 |
tatatagttatggacctatttgattgaatacaaattttatgaagtccgaatgaaaacggtatattaacatccccttagaagtttcgtctcactttgcata |
12641364 |
T |
|
| Q |
117 |
acatatacattaattaaaatgtggttaaataaattgttaagtcattctagttcaaacttttattcatttaagttttacaacttaaccaaaa |
207 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12641365 |
acaaagacattaattaaaatgtggttaaataaattgttaagtcattctagttcaaacttttattcatttaagttttacaacgtaaccaaaa |
12641455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 51894022 - 51893881
Alignment:
| Q |
17 |
tatatagttatggacctatttgattggatacaaactttatgaagtccgaataaaaacggtatattaacacccccttagaagtttcgtctcactttacata |
116 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||||| |||||||||| ||||| | |||||||| ||||||||||||| |
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| T |
51894022 |
tatatagttatgggcctatttgattggaaacaaattttatgaagcccgaatgaaaacaatatattaacatcccct-acaagtttcgcctcactttacata |
51893924 |
T |
|
| Q |
117 |
acatatacattaattaaaatgtggttaaataaattgttaagtc |
159 |
Q |
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||| | |||||| |||||||||||||||||||||||||||||| |
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| T |
51893923 |
acaaagacattagttaaaatgtggttaaataaattgttaagtc |
51893881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 51893631 - 51893568
Alignment:
| Q |
170 |
aaacttttattcatttaagttttacaacttaaccaaaagaaatgtttctttctatccattttaaa |
234 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||| |
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| T |
51893631 |
aaacttttattcatttaagttttataacgtaacaaaaa-aaatgtttctttctatccattttaaa |
51893568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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