View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0661_low_5 (Length: 540)

Name: NF0661_low_5
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0661_low_5
NF0661_low_5
[»] chr8 (7 HSPs)
chr8 (366-536)||(473240-473410)
chr8 (158-265)||(473452-473559)
chr8 (15-102)||(473585-473672)
chr8 (154-219)||(1838407-1838472)
chr8 (154-219)||(30587328-30587393)
chr8 (154-211)||(31671648-31671705)
chr8 (153-193)||(40473858-40473898)
[»] chr7 (4 HSPs)
chr7 (337-536)||(41521186-41521371)
chr7 (154-265)||(41521003-41521114)
chr7 (152-212)||(7964510-7964570)
chr7 (154-208)||(1824588-1824642)
[»] chr5 (3 HSPs)
chr5 (340-502)||(1242712-1242869)
chr5 (152-265)||(1242951-1243063)
chr5 (154-209)||(6689898-6689953)
[»] chr4 (1 HSPs)
chr4 (154-219)||(3607931-3607996)
[»] chr1 (4 HSPs)
chr1 (165-265)||(22206441-22206541)
chr1 (154-218)||(23920804-23920870)
chr1 (154-188)||(4798689-4798723)
chr1 (154-208)||(13842998-13843052)
[»] chr6 (2 HSPs)
chr6 (154-208)||(6632744-6632798)
chr6 (154-207)||(32868836-32868889)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 366 - 536
Target Start/End: Complemental strand, 473410 - 473240
Alignment:
Q  366 ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  473410 ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac 473311  T
Q  466 ccttgaactattttactacttcccaacaactctcatcgaaattgtttcatttatattcttctctgctcctc 536  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||    
T  473310 ccttgaactattttactaattcccaacaactctcatctaaattgtttcatttatattcttttctgttcctc 473240  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 473559 - 473452
Alignment:
Q  158 atagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttcttaat 257  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  473559 atagataataataaagcaagtttagtgttttggcaagtttgtcatttgtcatcttttaagaacaaccttccttcatactctttctaaattatttcttaat 473460  T
Q  258 aaggaaac 265  Q
    ||||||||    
T  473459 aaggaaac 473452  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 473672 - 473585
Alignment:
Q  15 tattgtttaagggctcaagttgcttaccatttggatcaaatgtatgtagtgaaaagtcatttaacgatggtagaccaatttgtttttg 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  473672 tattgtttaagggttcaagttgcttaccatttggatcaaatgtatgtagtgaaaagtcatttaacgatggtagaccaatttgtttttg 473585  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 1838472 - 1838407
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 219  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||    
T  1838472 atctatagataataataaagcaaacttagtattttggcaagtttgccatttgtcatcttctaagaa 1838407  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 30587393 - 30587328
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 219  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||| ||||||    
T  30587393 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaa 30587328  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 31671705 - 31671648
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatct 211  Q
    |||||||||||||||||||||||||||| | ||| ||||||| || ||||| ||||||    
T  31671705 atctatagataataataaagcaagcttaatttttgggcaaatatgacatttatcatct 31671648  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 40473898 - 40473858
Alignment:
Q  153 tatctatagataataataaagcaagcttagtattttggcaa 193  Q
    ||||||||||| ||||||||||||| ||||| |||||||||    
T  40473898 tatctatagattataataaagcaaggttagttttttggcaa 40473858  T

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Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 337 - 536
Target Start/End: Original strand, 41521186 - 41521371
Alignment:
Q  337 cgatatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  41521186 cgatatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaata------ 41521279  T
Q  437 gactgccgcttcagcttttgttcttctacccttgaactattttactacttcccaacaactctcatcgaaattgtttcatttatattcttctctgctcctc 536  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |||||    
T  41521280 --------cttcagcttttgttcttctacccttgaactattttactacttcccaacaagtctcatctaaattgtttcatttatattcttttctgttcctc 41521371  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 41521003 - 41521114
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttct 253  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||| || ||||||||||  |||||||||||||||||||||||||    
T  41521003 atctatagataataataaaggaagtttagtattttggcaagtttgccatttgtcatcttctaggaacaaccttccttgatactctttctaaattatttct 41521102  T
Q  254 taataaggaaac 265  Q
    ||||||||||||    
T  41521103 taataaggaaac 41521114  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 7964570 - 7964510
Alignment:
Q  152 ttatctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatctt 212  Q
    |||| |||||||||||||||||||||||||||||| |||||| | || |||||||||||||    
T  7964570 ttatttatagataataataaagcaagcttagtattatggcaagtatgacatttgtcatctt 7964510  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 1824642 - 1824588
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 208  Q
    ||||||||||||||||||||||| || ||||||||| ||| | || |||||||||    
T  1824642 atctatagataataataaagcaaactaagtattttgacaagtatgccatttgtca 1824588  T

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Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 340 - 502
Target Start/End: Complemental strand, 1242869 - 1242712
Alignment:
Q  340 tatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattca-tcttttgatttcaccattttctaaaaatacttttcga 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  1242869 tatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatttttttaatttcaccattttctaaaaatacttttcga 1242770  T
Q  439 ctgccgcttcagcttttgttcttctacccttgaactattttactacttcccaacaactctcatc 502  Q
    |  |||||||||||||||||||||||||      | |||||||||||||||||||| |||||||    
T  1242769 ccaccgcttcagcttttgttcttctacc------ccattttactacttcccaacaagtctcatc 1242712  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 1243063 - 1242951
Alignment:
Q  152 ttatctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattattt 251  Q
    ||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||| |||||||| || |||||||||||| ||||| ||||    
T  1243063 ttatctatagataataataaagcaaacttaatattttggtaagtttgtcatttgtcatcttttaggaacaacc-ttcttgatactctttgtaaataattt 1242965  T
Q  252 cttaataaggaaac 265  Q
    ||| ||||||||||    
T  1242964 ctttataaggaaac 1242951  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 6689953 - 6689898
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcat 209  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  6689953 atctacagataataataaagcaaacttagtattttggcaagtttgtcatctgtcat 6689898  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 3607996 - 3607931
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 219  Q
    ||||||||||||||||||| ||| || | ||||||||||| |||||||||||||||||||||||||    
T  3607996 atctatagataataataaaacaaactcattattttggcaagtttgtcatttgtcatcttttaagaa 3607931  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 22206541 - 22206441
Alignment:
Q  165 ataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttcttaataaggaaa 264  Q
    ||||||||||||  |||||  |||||||| || | ||||||||||||| ||||| || ||||  |||| ||||||||||||||||| |||||||||||||    
T  22206541 ataataaagcaaagttagttctttggcaagttagacatttgtcatcttctaagagcatccttccttgacactctttctaaattattgcttaataaggaaa 22206442  T
Q  265 c 265  Q
    |    
T  22206441 c 22206441  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 23920870 - 23920804
Alignment:
Q  154 atctatagataata--ataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaaga 218  Q
    ||||||||||||||  ||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  23920870 atctatagataatataataaagcaaacttagtattttggcaagtttgccatttgtcatcttttaaga 23920804  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 4798689 - 4798723
Alignment:
Q  154 atctatagataataataaagcaagcttagtatttt 188  Q
    ||||||||||||||||||| |||||||||||||||    
T  4798689 atctatagataataataaaacaagcttagtatttt 4798723  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 13842998 - 13843052
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 208  Q
    |||||||||||||||||||||||  ||||| ||||||||| | || |||||||||    
T  13842998 atctatagataataataaagcaatgttagttttttggcaagtatgacatttgtca 13843052  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 6632744 - 6632798
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 208  Q
    |||||||||||||||||||||||||| ||||||||| |||   ||||||||||||    
T  6632744 atctatagataataataaagcaagctcagtattttgacaagcctgtcatttgtca 6632798  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 32868889 - 32868836
Alignment:
Q  154 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtc 207  Q
    ||||||||||||||||||||||||||||||||| | |||| | || ||||||||    
T  32868889 atctatagataataataaagcaagcttagtattatagcaagtatgacatttgtc 32868836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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