View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_6 (Length: 515)
Name: NF0661_low_6
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 231 - 504
Target Start/End: Complemental strand, 7446360 - 7446087
Alignment:
| Q |
231 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
330 |
Q |
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| T |
7446360 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagttt |
7446261 |
T |
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| Q |
331 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446260 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7446161 |
T |
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| Q |
431 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcat |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446160 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcat |
7446087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 231 - 504
Target Start/End: Complemental strand, 7461304 - 7461031
Alignment:
| Q |
231 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
330 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7461304 |
gaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagttt |
7461205 |
T |
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| Q |
331 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
430 |
Q |
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| T |
7461204 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7461105 |
T |
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| Q |
431 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcat |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7461104 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcat |
7461031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 7446561 - 7446419
Alignment:
| Q |
27 |
ccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaatataatattg |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446561 |
ccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaatataatattg |
7446462 |
T |
|
| Q |
127 |
ttggaattaaaaaatttatgtctagttataatccaatcaactg |
169 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
7446461 |
ttggaattaaaaaatttatgtcaagttataatccaatccactg |
7446419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 7461549 - 7461445
Alignment:
| Q |
27 |
ccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaatataatattg |
126 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7461549 |
ccaccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatataatattg |
7461450 |
T |
|
| Q |
127 |
ttgga |
131 |
Q |
| |
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||||| |
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|
| T |
7461449 |
ttgga |
7461445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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