View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_7 (Length: 499)
Name: NF0661_low_7
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 493
Target Start/End: Original strand, 29335647 - 29336110
Alignment:
| Q |
30 |
aaaaattggtttcatgattaattaaagctaattcactaaatatgtccagcagtgaaaaagatgcttggttctgcaatgaaaatccatcagtttatagtca |
129 |
Q |
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| T |
29335647 |
aaaaattggtttcatgattaattaaagctaattcactaaatatgtccagcagtgaaaaagatgcttggttctgcaatgaaaatccatcagtttatagtca |
29335746 |
T |
|
| Q |
130 |
gtaagtatgaaaacatgagaagaaactcttaggatagcaaatatggttttaaagtaaacttgtgattcaagggcttgataattgaactttttgttgcaaa |
229 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335747 |
gtaagtatgaaaacaagagaagaaactcttagaatagcaaatatggttttaaagtaaacttgtgattcaagggcttgataattgaactttttgttgcaaa |
29335846 |
T |
|
| Q |
230 |
atcctttgtactagttttgttcttgatttaaatggaatcttgcaatatagatctattaaataaaatcctatagcctctcttaatattcatttaacacctg |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29335847 |
atcctttgtactagttttgttcttgatttaaatggaatcttgcaatatagatctattaaataaaatcatatagcctctcttaatattcatttaacacctg |
29335946 |
T |
|
| Q |
330 |
aaagaaaatggccaaatattttatttaatttatttttctgaaaataaagttcatttacccttggtatttgatttagagacaagatgttagttggtgctat |
429 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335947 |
aaagaaaatggccaaatattttatttagtttatttttctgaaaataaagtccatttacccttggtatttgatttagagacaagatgttagttggtgctat |
29336046 |
T |
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| Q |
430 |
atgaaattaattaaattcttgacttttgtgagcaaggtttcatacctatgtttatattattcga |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
29336047 |
atgaaattaattaaattcttgacttttgtgagcaaggtttcatacctatgtttatgttgttcga |
29336110 |
T |
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