View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0661_low_8 (Length: 494)
Name: NF0661_low_8
Description: NF0661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0661_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 23 - 385
Target Start/End: Original strand, 6994961 - 6995324
Alignment:
| Q |
23 |
tgctgtaattatatttttctatttt-ttaaactaattcagacataaacagaataatgtgagtacctagcaagaatcccactgaaaaaagttctaatgtct |
121 |
Q |
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| T |
6994961 |
tgctgtaattatatttttctatttttttaaactaattcagacataaacagaataatgtgagtacctagcaagaatcccactgaaaaaagttctaatgtct |
6995060 |
T |
|
| Q |
122 |
ccatttattaaatgaataaatactaatattctcttcctctatttaaaaacattaattcagacatagtcataaacaatattnnnnnnnnnnnnntactaat |
221 |
Q |
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| T |
6995061 |
ccatttattaaatgaataaatactaatattctcttcctctatttaaaaacattaattcagacatagtcataaacaatattaaaaaatgaaaaatactaat |
6995160 |
T |
|
| Q |
222 |
aacaacttacaggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcatattcatattaaaaatacattattacaa |
321 |
Q |
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| T |
6995161 |
aacaacttacaggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcatattcatattaaaaatacattattacaa |
6995260 |
T |
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| Q |
322 |
gaattaatttaccacttttacaaaaatgaaaattgataattgactaagaaaaccaaatagtttg |
385 |
Q |
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| T |
6995261 |
gaattaatttaccacttttacaaaaatgaaaattgataattgactaagaaaaccaaatagtttg |
6995324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 49085718 - 49085649
Alignment:
| Q |
225 |
aacttacaggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcat |
294 |
Q |
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||||||||| || || |||||||| ||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
49085718 |
aacttacagaattatcctcatcctcctgaagtgattgcataagcgtctttctgaaaacctctaactgcat |
49085649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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