View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0662-Insertion-1 (Length: 655)

Name: NF0662-Insertion-1
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0662-Insertion-1
NF0662-Insertion-1
[»] chr3 (6 HSPs)
chr3 (7-654)||(1726397-1727041)
chr3 (326-405)||(13361622-13361701)
chr3 (154-249)||(15668581-15668676)
chr3 (326-405)||(13293506-13293585)
chr3 (35-83)||(15668760-15668808)
chr3 (588-650)||(13293218-13293280)
[»] chr7 (2 HSPs)
chr7 (329-424)||(4447384-4447479)
chr7 (149-402)||(10347364-10347617)
[»] chr4 (3 HSPs)
chr4 (326-399)||(11450232-11450305)
chr4 (144-180)||(11450463-11450499)
chr4 (357-405)||(12407100-12407148)
[»] chr6 (2 HSPs)
chr6 (468-540)||(17235817-17235888)
chr6 (313-357)||(17235652-17235696)
[»] chr2 (1 HSPs)
chr2 (357-399)||(22677941-22677983)
[»] chr1 (1 HSPs)
chr1 (357-407)||(23976337-23976387)
[»] chr8 (1 HSPs)
chr8 (313-417)||(17932289-17932393)


Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 654
Target Start/End: Complemental strand, 1727041 - 1726397
Alignment:
Q  7 attacctcatcaagagattttcattccatatactcagagtcttagattcctctgccactaaatcatatttcctttgtnnnnnnnnttaagttttatgatt 106  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||  ||| |||||    
T  1727041 attacctcatcaagagat---cattccatatactcagagtcttagattcctctgccactaaatcatatttcctttgtaaaaaaaattaaactttttgatt 1726945  T
Q  107 tgataagacaacgacatagaattgacaacctcttcgcgagtcagtttagaaaatacttcatcatcatcatcataatctacttcagattctacatcataaa 206  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  1726944 tgctaagacaacgacatagaattgacaacctcttcgcgagtcagtttagaaaatacttcatcatcatcatcatcatctacttcagattctacatcataag 1726845  T
Q  207 ttgttgaagccatcaaagtcataatggcttcttcttcattagtttcttcatcaagttcatcccatgttgacatgaaacctttcttgactctaattttgaa 306  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1726844 ttgttgaagccatcaaagtcatattggcttcttcttcattagtttcttcatcaagttcatcccatgttgacatgaaacctttcttgaatctaattttgaa 1726745  T
Q  307 tctttacttcttagagatttccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttc 406  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  1726744 tctttatttcttagagatttccttctttgacttgttcgtctgcaactctagacaatcagcaatgaagtgaccaggtttcttgctgttgaagaaacccttc 1726645  T
Q  407 taatcat---------ccttgtagcctgatcctttagatccactagttctagttggaaacatttttcttcttggtaaggtacttaaatattttggtcaga 497  Q
    |||||||         |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1726644 taatcatccttctcatccttgtagtctgatcctttagatccactagttctagttggaaacatttttcttcttggtaaggtacttgaatattttggtcaga 1726545  T
Q  498 aatgtcatctcttcagcatctaacccatcttcagattctccatctagagtctcttctgactcaacaacttgaagagcttagtagatttcccttagcgggt 597  Q
    ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1726544 aa---------ttcagcatctaacccatcttcagattctccatctagagtctcttctgactcaacaacttgaagagcttagtagatttcccttagcggat 1726454  T
Q  598 tcatctccaacaagctccatctcatgacagttgagataacttattagattctcaatg 654  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||    
T  1726453 tcatctccaacaagctccatctcatgatacttgaggtaacttattagattctcaatg 1726397  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 13361622 - 13361701
Alignment:
Q  326 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 405  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||| ||| || ||||||||| |  ||||||||||||    
T  13361622 tccttctttgacttgtctttctgtaactctagacaatcagcaatgaaatgaccaagtttcttgcagcggaagcaaccctt 13361701  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 15668676 - 15668581
Alignment:
Q  154 agaaaatacttcatcatcatcatcataatctacttcagattctacatcataaattgttgaagccatcaaagtcataatggcttcttcttcattagt 249  Q
    |||||||| || |||||||  || | |||| |||||||||||||||||| || | |||||||||||||| | || | |||||||||||||||||||    
T  15668676 agaaaataatttatcatcagaatgaaaatcaacttcagattctacatcagaagtcgttgaagccatcaatgccaaattggcttcttcttcattagt 15668581  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 13293585 - 13293506
Alignment:
Q  326 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 405  Q
    ||||||||| |||||||  |||| ||||||||||| ||||||||||| ||| || ||||||||| |  ||||||||||||    
T  13293585 tccttctttcacttgtctttctgtaactctagacagtcagcaatgaaatgaccaagtttcttgcagcggaagcaaccctt 13293506  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 15668808 - 15668760
Alignment:
Q  35 tatactcagagtcttagattcctctgccactaaatcatatttcctttgt 83  Q
    ||||||||||||||||||||||| || ||| |||||||||| |||||||    
T  15668808 tatactcagagtcttagattcctttgtcaccaaatcatattgcctttgt 15668760  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 650
Target Start/End: Complemental strand, 13293280 - 13293218
Alignment:
Q  588 cttagcgggttcatctccaacaagctccatctcatgacagttgagataacttattagattctc 650  Q
    |||||| |||||||||||||||||||| ||||||||| | |||||  | ||||| ||||||||    
T  13293280 cttagcaggttcatctccaacaagctcaatctcatgatatttgagggagcttatcagattctc 13293218  T

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Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 329 - 424
Target Start/End: Original strand, 4447384 - 4447479
Alignment:
Q  329 ttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttgtagcct 424  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||| ||||||| || ||| || ||||||    
T  4447384 ttctttgacttgtccttctgcaactctagacagtcagtaatgaagtgatcaggtttcttgcagttgaagcatcccttctgattatctttctagcct 4447479  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 149 - 402
Target Start/End: Complemental strand, 10347617 - 10347364
Alignment:
Q  149 agtttagaaaatacttcatcatcatcatcataatctacttcagattctacatcataaattgttgaagccatcaaagtcataatggcttcttcttcattag 248  Q
    |||| ||||||||| ||||| ||||| |||  |||| ||||||||| | ||||| |   |||||||||| |||| | |  | ||||||||||||||| ||    
T  10347617 agttcagaaaatacctcatcctcatcctcaggatctgcttcagattttgcatcagaggatgttgaagccgtcaatgcctaattggcttcttcttcatcag 10347518  T
Q  249 tttcttcatcaagttcatcccatgttgacatgaaacctttcttgactctaattttgaatctttacttcttagagatttccttctttgacttgtccgtctg 348  Q
    ||| ||||| ||| || |||||||||| ||||  || ||| |||||| |  |||||||  | | |||||||||| |||| |||||| |||||| | || |    
T  10347517 tttattcatgaagatcttcccatgttgccatgtgacttttattgactttgcttttgaaattctccttcttagagctttcattctttaacttgttcttcag 10347418  T
Q  349 caactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacc 402  Q
     |||||| |||| |||| |||||||||  || |||| ||||  |||||||||||    
T  10347417 taactctggacagtcagaaatgaagtggacaagttttttgcaattgaagcaacc 10347364  T

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Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 11450305 - 11450232
Alignment:
Q  326 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagca 399  Q
    |||||||| ||||||||| |||| |||||| |||||||| ||||||| |||||| |||||||||||||||||||    
T  11450305 tccttcttcgacttgtccttctgtaactctggacaatcaacaatgaaatgatcaagtttcttgctgttgaagca 11450232  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 11450499 - 11450463
Alignment:
Q  144 gagtcagtttagaaaatacttcatcatcatcatcata 180  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  11450499 gagtcagtttagagaatacctcatcatcatcatcata 11450463  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 12407148 - 12407100
Alignment:
Q  357 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 405  Q
    |||||||||||||||||||| || ||||||| | ||||||||| |||||    
T  12407148 gacaatcagcaatgaagtgaccaggtttcttacagttgaagcatccctt 12407100  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 468 - 540
Target Start/End: Original strand, 17235817 - 17235888
Alignment:
Q  468 ttggtaaggtacttaaatattttggtcagaaatgtcatctcttcagcatctaacccatcttcagattctccat 540  Q
    ||||| ||||||| | || |||||||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  17235817 ttggtcaggtactgatatcttttggtcagaaatgtcatctctttagcatctaa-tcatcttcagattctccat 17235888  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 17235652 - 17235696
Alignment:
Q  313 cttcttagagatttccttctttgacttgtccgtctgcaactctag 357  Q
    ||||||||||||||| ||||||| || |||| |||||||||||||    
T  17235652 cttcttagagatttctttctttggctcgtccttctgcaactctag 17235696  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 22677941 - 22677983
Alignment:
Q  357 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagca 399  Q
    |||||||||||||||||||| || ||||||||| |||||||||    
T  22677941 gacaatcagcaatgaagtgaccaagtttcttgcagttgaagca 22677983  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 23976387 - 23976337
Alignment:
Q  357 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttct 407  Q
    |||||||||||||||||||| ||  |||||||| ||||||||| |||||||    
T  23976387 gacaatcagcaatgaagtgaccagatttcttgcagttgaagcatcccttct 23976337  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 417
Target Start/End: Complemental strand, 17932393 - 17932289
Alignment:
Q  313 cttcttagagatttccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatca 412  Q
    |||||||||| |||| |||||  |||||||| | ||||| ||| |||||  || ||| | |||| || | ||||||| || |||||||||||||| ||||    
T  17932393 cttcttagagctttctttcttacacttgtccttttgcaaatctggacaacaagtaatcacgtgaccaggcttcttgcagtggaagcaacccttctgatca 17932294  T
Q  413 tcctt 417  Q
    |||||    
T  17932293 tcctt 17932289  T

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