View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0662-Insertion-2 (Length: 551)

Name: NF0662-Insertion-2
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0662-Insertion-2
NF0662-Insertion-2
[»] chr7 (6 HSPs)
chr7 (229-551)||(4554529-4554851)
chr7 (241-483)||(37616812-37617053)
chr7 (241-483)||(36828794-36829034)
chr7 (255-450)||(43282672-43282867)
chr7 (255-459)||(4968100-4968304)
chr7 (318-384)||(18713225-18713292)
[»] chr5 (7 HSPs)
chr5 (8-219)||(35227864-35228075)
chr5 (229-445)||(35228096-35228312)
chr5 (241-459)||(33672128-33672346)
chr5 (255-335)||(21286116-21286196)
chr5 (517-551)||(35228346-35228380)
chr5 (8-73)||(13556822-13556887)
chr5 (8-73)||(13534934-13534999)
[»] scaffold0044 (1 HSPs)
scaffold0044 (255-483)||(82943-83170)
[»] chr1 (7 HSPs)
chr1 (294-472)||(8113786-8113964)
chr1 (255-459)||(47974931-47975135)
chr1 (255-463)||(24765233-24765441)
chr1 (264-360)||(125284-125380)
chr1 (246-335)||(23894573-23894662)
chr1 (255-326)||(20010614-20010685)
chr1 (262-384)||(325836-325959)
[»] chr8 (2 HSPs)
chr8 (255-459)||(10289570-10289774)
chr8 (255-459)||(43266157-43266361)
[»] chr2 (5 HSPs)
chr2 (255-459)||(1658657-1658861)
chr2 (255-335)||(38432105-38432185)
chr2 (229-341)||(22710226-22710338)
chr2 (318-378)||(8148771-8148831)
chr2 (318-378)||(8153395-8153455)
[»] chr3 (5 HSPs)
chr3 (241-459)||(48663868-48664085)
chr3 (255-459)||(4100627-4100831)
chr3 (296-459)||(28160476-28160639)
chr3 (229-295)||(2994097-2994163)
chr3 (338-384)||(16900498-16900544)
[»] chr4 (1 HSPs)
chr4 (288-384)||(11057097-11057194)
[»] chr6 (1 HSPs)
chr6 (288-384)||(5319528-5319625)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 229 - 551
Target Start/End: Complemental strand, 4554851 - 4554529
Alignment:
Q  229 caatagcggttaaacgcggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtt 328  Q
    |||||||| | ||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  4554851 caatagcgttcaaatgcggcgcgatcgcggctgaaaacagcctagc-cgtcagaacgcgaccgagtcgcgcgttaggcaaaagcggaacaaaaccgggtt 4554753  T
Q  329 tcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaag 428  Q
    || |||| ||||||||||||| |||||||||| || || ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  4554752 tcgcggccgctttacatggagtggtagcgggtcaaatcacccgcttttccggttcgaaacgaaattatggaattatccctcacttaagtaacgttagaag 4554653  T
Q  429 ggttaattttgtcattttcaaagccctattttctttcatccatttccatcgtagact--agagaacacaaccgcttcttctcttcattcaatcgtacata 526  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||| ||||||| |    
T  4554652 ggttaattttgtcattttcaaagccctattttctttcatcca-ttccatcgtagactacagagaacacagccgcttcttctcttcattcattcgtacaga 4554554  T
Q  527 gcaaaacaacacttcacttcatctc 551  Q
    ||||||||||| ||| | |||||||    
T  4554553 gcaaaacaacatttcgcctcatctc 4554529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 241 - 483
Target Start/End: Original strand, 37616812 - 37617053
Alignment:
Q  241 aacgcggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctt 340  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| |||||  ||||| |||| | ||||||||  |||||||||||||| |||| ||||    
T  37616812 aacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgtgttagggaaaagcggtccaaaaccgggtttcgcggccgctt 37616911  T
Q  341 tacatggagcggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgt 440  Q
    ||| |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616912 tacgtggagcggtagcgggtcaaatcgcccacttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgt 37617011  T
Q  441 cattttcaaagccctattttctttcatccatttccatcgtaga 483  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  37617012 cattttcaaagccctattttctttcatcca-ttccatcgtaga 37617053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 241 - 483
Target Start/End: Complemental strand, 36829034 - 36828794
Alignment:
Q  241 aacgcggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctt 340  Q
    ||||||||||||||||||||||||||||| |||||||| ||| || |||||  |||||||||| | ||||||||  |||||||||||||| |||| ||||    
T  36829034 aacgcggcgcgatcgcggctgaaaacagcctagcgcgttagatcgcgaccgcatcgcgcgttagggaaaagcggtccaaaaccgggtttcgcggccgctt 36828935  T
Q  341 tacatggagcggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgt 440  Q
    |||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36828934 tacatggagcggtagcgggtcaaatcgcccgcttttccaggtcg-aacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgt 36828836  T
Q  441 cattttcaaagccctattttctttcatccatttccatcgtaga 483  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
T  36828835 cattttcaaagtcctattttctttcatcca-ttccatcgtaga 36828794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 255 - 450
Target Start/End: Original strand, 43282672 - 43282867
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    ||||||||||||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||||||||| | |||||||| |    
T  43282672 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggctgcttttcgtggagcggga 43282771  T
Q  355 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaa 450  Q
    |||||| |||  ||  ||| ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| |||||||||    
T  43282772 gcgggtctaacgcg-gcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaa 43282867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 255 - 459
Target Start/End: Original strand, 4968100 - 4968304
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    ||||||||||||||| |||||| |||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||| | |    
T  4968100 gcggctgaaaacagcctagcgcatcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagctgga 4968199  T
Q  355 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 453  Q
    |||||| |||  || | || ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||| ||    
T  4968200 gcgggtctaacgcggc-gcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaaacc 4968298  T
Q  454 ctattt 459  Q
    ||||||    
T  4968299 ctattt 4968304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 18713292 - 18713225
Alignment:
Q  318 aaaaccgggtttcacggctgc-tttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 384  Q
    |||| |||||||| |||| || ||||| |||||||| ||||||| || ||||||||||||||||||||    
T  18713292 aaaagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgcccgcttttccgggtcg 18713225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 35227864 - 35228075
Alignment:
Q  8 tcttctaagcgcctccatgattttacggtatgattaatccatacgtcgaccaatttcgctaactgaattgggtatgagagaaaggaaattcgtgaaagaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35227864 tcttctaagcgcctccatgattttacggtatgattaatccatacgtcgaccaatttcgctaactgaattgggtatgagagaaaggaaattcgtgaaagaa 35227963  T
Q  108 atggagttcgggataaaatggcgttcatggatgaaatgaagtttgaaaatgaaaacaccaataatagaatgtgaaaaataacagtgataatcattccaat 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  |||||||    
T  35227964 atggagttcgggataaaatggtgttcatggatgaaatgaagttcgaaaatgaaaacaccaacaatagaatgtgaaaaataacagtgataattgttccaat 35228063  T
Q  208 ttgagaaagaat 219  Q
    ||||||||||||    
T  35228064 ttgagaaagaat 35228075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 229 - 445
Target Start/End: Complemental strand, 35228312 - 35228096
Alignment:
Q  229 caatagcggttaaacgcggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtt 328  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||    
T  35228312 caatagcgatcaaacgcggcgcgatcgcggctgaaaacagcctagcgcgtcagaacgcgatcgagtcgcgcattaagcaaaagcggaacaaaaccgggtt 35228213  T
Q  329 tcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaag 428  Q
    || | || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  35228212 tcgcagccgctttacatggagcggtagctggtcaagtcgcccgcttttccgggtcgaaacgaaattacggaattatccctcacttatgtaacgttagaag 35228113  T
Q  429 ggttaattttgtcattt 445  Q
    |||||||||||||||||    
T  35228112 ggttaattttgtcattt 35228096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 241 - 459
Target Start/End: Original strand, 33672128 - 33672346
Alignment:
Q  241 aacgcggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgc-t 339  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| || |    
T  33672128 aacgcggcgcgatcgctgctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgctt 33672227  T
Q  340 ttacatggagcggtagcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaatttt 438  Q
    ||   | |||||| || |||| |||  ||  ||| ||||||||| ||| |||||||||  ||||| ||||||| ||||| || |||||||||||||||||    
T  33672228 tttgttagagcgggagtgggtctaacgcg-gcgcgtttccgggttgaagcgaaattacataattacccctcac-taagtgacattagaagggttaatttt 33672325  T
Q  439 gtcattttcaaagccctattt 459  Q
    || ||||||||||||||||||    
T  33672326 gtaattttcaaagccctattt 33672346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 21286196 - 21286116
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggc 335  Q
    ||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  21286196 gcggctgaaaacagcctagcgcgtcaaaacgcgaccgagtcgcgcgttaggcaaaagcggaacgaaaccgggtttcgcggc 21286116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 35228346 - 35228380
Alignment:
Q  517 atcgtacatagcaaaacaacacttcacttcatctc 551  Q
    |||||||||||||||||||||||||||||||||||    
T  35228346 atcgtacatagcaaaacaacacttcacttcatctc 35228380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 13556887 - 13556822
Alignment:
Q  8 tcttctaagcgcctccatgattttacggtatgattaatccatacgtcgaccaatttcgctaactga 73  Q
    |||| |||||||||||||||||| ||||||||||| ||| |||||| || ||||||| ||| ||||    
T  13556887 tcttgtaagcgcctccatgatttgacggtatgattcatctatacgttgatcaatttctctagctga 13556822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 13534999 - 13534934
Alignment:
Q  8 tcttctaagcgcctccatgattttacggtatgattaatccatacgtcgaccaatttcgctaactga 73  Q
    |||| |||||||||||||||||| ||||||||||| ||  |||||| || ||||||| ||| ||||    
T  13534999 tcttgtaagcgcctccatgatttgacggtatgattcatttatacgttgatcaatttctctagctga 13534934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 255 - 483
Target Start/End: Original strand, 82943 - 83170
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    ||||| ||||||||| |||||||| |||||| ||||   |||||||||| | ||||||||  |||||||||||||| |||  ||||||| ||||||||||    
T  82943 gcggcggaaaacagcctagcgcgttagaacgcgaccacatcgcgcgttagggaaaagcggtccaaaaccgggtttcgcgggcgctttacgtggagcggta 83042  T
Q  355 gcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccc 454  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  83043 gcgggtcaaatcgcccgcttttccgggtcgaaacgaaataacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaaaccc 83142  T
Q  455 tattttctttcatccatttccatcgtaga 483  Q
    |||||||||||||||| ||||||||||||    
T  83143 tattttctttcatcca-ttccatcgtaga 83170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 294 - 472
Target Start/End: Original strand, 8113786 - 8113964
Alignment:
Q  294 tcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaat 393  Q
    |||||||||| | |||| |||  |||||| ||||||| |||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  8113786 tcgcgcgttagggaaaaacggtccaaaactgggtttcgcggccgctttacatggagcggtagcgggtcaaatcgcccgcttttccggatcgaaacgaaat 8113885  T
Q  394 tacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatccatt 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8113886 tacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatccatt 8113964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 459
Target Start/End: Complemental strand, 47975135 - 47974931
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    ||||||||||||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||||| |    
T  47975135 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagcggga 47975036  T
Q  355 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 453  Q
    |||||| |||  || | || ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  47975035 gcgggtctaacgcggc-gcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagcc 47974937  T
Q  454 ctattt 459  Q
    ||||||    
T  47974936 ctattt 47974931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 255 - 463
Target Start/End: Original strand, 24765233 - 24765441
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    ||||||||||||||| |||||||| |||||| |||||   ||||||||| ||||||||||| | ||||||| ||||  ||| ||||| | ||||||||||    
T  24765233 gcggctgaaaacagcctagcgcgttagaacgcgaccgcaacgcgcgttaggcaaaagcggacctaaaccggttttcgtggccgcttttcctggagcggta 24765332  T
Q  355 gcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccc 454  Q
    |||||| || |||||||||||||||||||||    |||||||||||||  ||||||||||||| || |||| |||||||||||||| |||||| || |||    
T  24765333 gcgggtcaaatcgcccgcttttccgggtcgaccaaaaattacgaaattgcccctcacttaagtgacattagtagggttaattttgtaattttccaaaccc 24765432  T
Q  455 tattttctt 463  Q
    |||||||||    
T  24765433 tattttctt 24765441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 264 - 360
Target Start/End: Original strand, 125284 - 125380
Alignment:
Q  264 aacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggtagcgggt 360  Q
    |||||| ||||||||||||||  |||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  125284 aacagcctagcgcgtcagaactcgaccgagtcgtgcgttaggcaaaagcggaacaaaaccgggtttcgcggccgctttacatggagcggtagcgggt 125380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 23894662 - 23894573
Alignment:
Q  246 ggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggc 335  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||| ||||||||||||| |||||||||||| ||||    
T  23894662 ggcgcgatcgcggctgaaaacagcctagcgcgtcagaacgcgactgagtcacgcgttaggcaaaagcggaacgaaaccgggtttcgcggc 23894573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 20010685 - 20010614
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccggg 326  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||| | ||||||||||    
T  20010685 gcggctgaaaacagcctagcgcgttagaacgcgaccgagtcgcgcgttaggcaaaagcgcaccaaaaccggg 20010614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 384
Target Start/End: Complemental strand, 325959 - 325836
Alignment:
Q  262 aaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgc-tttacatggagcggtagcgggt 360  Q
    |||||||| || ||||||||| ||   |||| |||||||||| | ||||||||  ||| | |||||||| |||| || ||||| |||||||| |||||||    
T  325959 aaaacagcctaccgcgtcagagcgcacccgattcgcgcgttagggaaaagcgggtcaatagcgggtttcgcggccgcctttacctggagcgggagcgggt 325860  T
Q  361 taagtcgcccgcttttccgggtcg 384  Q
     || ||||| ||||||||||||||    
T  325859 caaatcgcctgcttttccgggtcg 325836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 255 - 459
Target Start/End: Original strand, 10289570 - 10289774
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    |||| |||||||||| |||||||| |||||| |||||   ||||||||| ||||||||||  | |||||||||||  |||| ||||| |||||||||| |    
T  10289570 gcggttgaaaacagcctagcgcgttagaacgcgaccgcaacgcgcgttaggcaaaagcggtcctaaaccgggttttgcggccgcttttcatggagcggga 10289669  T
Q  355 gcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccc 454  Q
    |||||| || |||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||    
T  10289670 gcgggtcaaatcgcccgcttttccgggtcgaaacaaaattacaaaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagccc 10289769  T
Q  455 tattt 459  Q
    |||||    
T  10289770 tattt 10289774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 255 - 459
Target Start/End: Complemental strand, 43266361 - 43266157
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    ||||||||||||||| ||||||||||||||  |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||||| |    
T  43266361 gcggctgaaaacagcctagcgcgtcagaacacgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagcggga 43266262  T
Q  355 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 453  Q
    | |||| |||  || | || ||| ||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  43266261 gtgggtctaacgcggc-gcgttttcgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagcc 43266163  T
Q  454 ctattt 459  Q
    ||||||    
T  43266162 ctattt 43266157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 459
Target Start/End: Original strand, 1658657 - 1658861
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    ||||||||||||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||||| |    
T  1658657 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagcggga 1658756  T
Q  355 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 453  Q
    |||||| |||  || | || ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  1658757 gcgggtctaacgcggc-gcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagcc 1658855  T
Q  454 ctattt 459  Q
    ||||||    
T  1658856 ctattt 1658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 38432105 - 38432185
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggc 335  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||| ||||    
T  38432105 gcggctgaaaacagcctagcgcgtcagaacgcgaccgagtcgcgcgttagacaaaagcggaacaaaacggggtttcgcggc 38432185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 22710226 - 22710338
Alignment:
Q  229 caatagcggttaaacgcggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtt 328  Q
    ||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||| |||||   ||||||||| |||| |||||   |||||||||||    
T  22710226 caatagcggcttaacgcggcacgatcgcggctgaaaacagcctagcgcgtcagaacgcgaccgcaacgcgcgttaggcaatagcgggcgaaaaccgggtt 22710325  T
Q  329 tcacggctgcttt 341  Q
    || |||| |||||    
T  22710326 tcgcggccgcttt 22710338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 8148771 - 8148831
Alignment:
Q  318 aaaaccgggtttcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttcc 378  Q
    |||| ||| |||| |||| |||||||||||||||||||||||| || |||||| |||||||    
T  8148771 aaaagcggatttcgcggccgctttacatggagcggtagcgggtcaaatcgcccacttttcc 8148831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 8153395 - 8153455
Alignment:
Q  318 aaaaccgggtttcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttcc 378  Q
    |||| ||| |||| |||| |||||||||||||||||||||||| || |||||| |||||||    
T  8153395 aaaagcggatttcgcggccgctttacatggagcggtagcgggtcaaatcgcccacttttcc 8153455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 241 - 459
Target Start/End: Complemental strand, 48664085 - 48663868
Alignment:
Q  241 aacgcggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctt 340  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||    
T  48664085 aacgcggcgcgaa-gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgctt 48663987  T
Q  341 tacatggagcggtagcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttg 439  Q
    | | |||||||| ||||||| |||  ||  ||| ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||    
T  48663986 ttcgtggagcgggagcgggtctaacgcg-gcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttg 48663888  T
Q  440 tcattttcaaagccctattt 459  Q
    | ||||||||| ||||||||    
T  48663887 taattttcaaaaccctattt 48663868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 255 - 459
Target Start/End: Original strand, 4100627 - 4100831
Alignment:
Q  255 gcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 354  Q
    ||||||||||||||| ||||||||||||||| |||||  |||||||||| |||||||| |   ||||||||||||| |||| ||||| | |||||||| |    
T  4100627 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcagctgaaaaccgggtttcgcggccgcttttcgtggagcggga 4100726  T
Q  355 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 453  Q
    |||||| |||  ||  ||| ||||||||||||| |||||||||  ||||| ||||||||||||| || |||||||| |||||||||| ||||||||| ||    
T  4100727 gcgggtctaacgcg-gcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaaggtttaattttgtaattttcaaaacc 4100825  T
Q  454 ctattt 459  Q
    ||||||    
T  4100826 ctattt 4100831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 459
Target Start/End: Original strand, 28160476 - 28160639
Alignment:
Q  296 gcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggtagcgggttaagtcgcc-cgcttttccgggtcgaaacgaaatt 394  Q
    |||||||| ||||||||||   ||||||||||||  |||| ||||| | |||||||| |||||||  || |||  | | ||||||||||||| |||||||    
T  28160476 gcgcgttaggcaaaagcggctgaaaaccgggttttgcggccgcttttcgtggagcgggagcgggtctag-cgcggcacgtttccgggtcgaagcgaaatt 28160574  T
Q  395 acgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattt 459  Q
    ||  ||||| ||||||||||||| || |||||| |||||||||||| ||||||||||||||||||    
T  28160575 acagaattacccctcacttaagtgacattagaaaggttaattttgtaattttcaaagccctattt 28160639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 2994163 - 2994097
Alignment:
Q  229 caatagcggttaaacgcggcgcgatcgcggctgaaaacagcgtagcgcgtcagaacgtgaccgagtc 295  Q
    |||||||||  ||||||||||| |||||||| ||||||||| |||||||||||| || |||||||||    
T  2994163 caatagcggccaaacgcggcgcaatcgcggccgaaaacagcctagcgcgtcagagcgcgaccgagtc 2994097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 16900544 - 16900498
Alignment:
Q  338 ctttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 384  Q
    |||||| |||||||| ||||||| || ||||||||||||||||||||    
T  16900544 ctttacttggagcgggagcgggtcaaatcgcccgcttttccgggtcg 16900498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 384
Target Start/End: Complemental strand, 11057194 - 11057097
Alignment:
Q  288 accgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgc-tttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 384  Q
    ||||| |||||||||| | ||||||||  ||| | |||||||| |||| |  ||||| |||||||| ||||||| || ||||||||||||||||||||    
T  11057194 accgattcgcgcgttagggaaaagcgggtcaatagcgggtttcgcggccgggtttacctggagcgggagcgggtcaaatcgcccgcttttccgggtcg 11057097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 5319528 - 5319625
Alignment:
Q  288 accgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgc-tttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 384  Q
    ||||| |||||||||| | ||||||||  | | | |||||||| |||| || ||||| |||||||| ||||||| || ||||| ||||||||||||||    
T  5319528 accgattcgcgcgttagggaaaagcgggtccatagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgccagcttttccgggtcg 5319625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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