View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0662-Insertion-3 (Length: 307)
Name: NF0662-Insertion-3
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662-Insertion-3 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 2351221 - 2350922
Alignment:
| Q |
8 |
cccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacatt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
2351221 |
cccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacatt |
2351122 |
T |
|
| Q |
108 |
atgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccattt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351121 |
atgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccattt |
2351022 |
T |
|
| Q |
208 |
ccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtggaag |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351021 |
ccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtggaag |
2350922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 2303645 - 2303346
Alignment:
| Q |
8 |
cccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacatt |
107 |
Q |
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||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| |||| | |
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| T |
2303645 |
cccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaacagaaa |
2303546 |
T |
|
| Q |
108 |
atgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccattt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
2303545 |
atgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttcacttcctccttctctccattc |
2303446 |
T |
|
| Q |
208 |
ccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtggaag |
307 |
Q |
| |
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||||| |||||||||||||| |||||| ||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
2303445 |
tcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtacttaaccaaattcgccataatccattgcaaagtagtggaag |
2303346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 2327197 - 2326901
Alignment:
| Q |
11 |
accccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatg |
110 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| || |||| || || || |||||| ||| |
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| T |
2327197 |
accccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacacaaaatg |
2327098 |
T |
|
| Q |
111 |
ccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttcca |
210 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| |||| |||| |||||| ||||| |||||||||||||||||| |||||||| || ||| |
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| T |
2327097 |
ccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctacaacacca |
2326998 |
T |
|
| Q |
211 |
tcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtggaag |
307 |
Q |
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||| |||||| | |||||||||||| | ||||||||||| ||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
2326997 |
tcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaccaaattcgccataatccaatgcaaagcggtggaag |
2326901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 2330912 - 2330616
Alignment:
| Q |
11 |
accccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatg |
110 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||| |||| ||||| || ||||| ||| |
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| T |
2330912 |
accccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaaatg |
2330813 |
T |
|
| Q |
111 |
ccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttcca |
210 |
Q |
| |
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||| |||||||||||||||||||||||||||||||| || |||| |||| |||||| ||||| |||||||||||||||||| ||||||||||| || |
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| T |
2330812 |
ccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctccagcatca |
2330713 |
T |
|
| Q |
211 |
tcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtggaag |
307 |
Q |
| |
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|| |||||||||||| ||||||| ||||||||| |||| || ||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
2330712 |
tcgccacccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcaccaaattcgccataatccattgcaaagcggtggaag |
2330616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 2294026 - 2293743
Alignment:
| Q |
14 |
ccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgccc |
113 |
Q |
| |
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||||||| |||| || ||||| |||||||| |||||||||||||||||||| | |||| |||||||||| ||||||||||||| ||| | | ||| |
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| T |
2294026 |
ccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccc |
2293927 |
T |
|
| Q |
114 |
cggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccatca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| |
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| T |
2293926 |
cggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatca |
2293827 |
T |
|
| Q |
214 |
tgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaa |
297 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| ||||| || ||||||||||| | ||| ||||||||||| |||||| |
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| T |
2293826 |
ccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcactacattcgccataatccactgcaaa |
2293743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 2321347 - 2321047
Alignment:
| Q |
8 |
cccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacatt |
107 |
Q |
| |
|
||||| ||||||| | || ||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| |||||| ||||| |||||| |
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| T |
2321347 |
cccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaacacaaa |
2321248 |
T |
|
| Q |
108 |
atgcccc-ggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatt |
206 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| || |||| ||| |||||||||||| | |||||||||||||||| ||||||||||||| |
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|
| T |
2321247 |
atgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctctttcacttcctccttctctccatt |
2321148 |
T |
|
| Q |
207 |
tccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtggaa |
306 |
Q |
| |
|
||||| | |||||||||| | |||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
2321147 |
gtcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaa |
2321048 |
T |
|
| Q |
307 |
g |
307 |
Q |
| |
|
| |
|
|
| T |
2321047 |
g |
2321047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 31 - 290
Target Start/End: Complemental strand, 2310340 - 2310081
Alignment:
| Q |
31 |
aaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgccccggtggatgacgcctca |
130 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| | |||| |||||||||| ||||||||||||| ||| | | ||||| |||||||||||||| |
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| T |
2310340 |
aaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccccgatggatgacgcctca |
2310241 |
T |
|
| Q |
131 |
acccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccatcatgacccatcacctccct |
230 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
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|
| T |
2310240 |
acccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccacccatcacctcccg |
2310141 |
T |
|
| Q |
231 |
aatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatcca |
290 |
Q |
| |
|
|||||| |||||||||||||| | ||| || ||||||||||||| ||| ||||||||||| |
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|
| T |
2310140 |
aatctcctccacaagcctccccttcacttctgggtacttcaccacattcgccataatcca |
2310081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 26506836 - 26506746
Alignment:
| Q |
8 |
cccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtgg |
98 |
Q |
| |
|
||||||| | |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||||||| ||||| || ||||| |
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|
| T |
26506836 |
cccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtcactgcatgtgg |
26506746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 26494780 - 26494726
Alignment:
| Q |
19 |
tctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaa |
73 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |
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| T |
26494780 |
tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaa |
26494726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 41127216 - 41127050
Alignment:
| Q |
19 |
tctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgccccggtg |
118 |
Q |
| |
|
||||||||||| ||||| || | |||||||||||| ||| ||||| | |||| ||||||||| ||||||| || || |||||| |||||||||| |
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|
| T |
41127216 |
tctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtg |
41127117 |
T |
|
| Q |
119 |
gatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctcttt |
185 |
Q |
| |
|
| |||| ||||| ||||||||||| |||||| || ||||| || |||||||| ||||||||||| |
|
|
| T |
41127116 |
ggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
41127050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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