View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0662_high_12 (Length: 256)
Name: NF0662_high_12
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26835679 - 26835906
Alignment:
| Q |
1 |
tcttaatattcatcttcatggcttccactccacaatctatgttttgtacgctacacgttgcttaacataataaatcctataaacgtacaaaaaagacggc |
100 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835679 |
tcttaatcatcatcatcatggcttccactccacaatctatgttttgtacgctacacgttgcttaacataataaatcctataaacgtacaaaaaagacggc |
26835778 |
T |
|
| Q |
101 |
tcaaattaatttctaacatgaaccttcgtgatactttcttttttccctcatttaatttacttatatatatgtgtttgaaatcaatcaaattattatataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |
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| T |
26835779 |
tcaaattaatttctaacatgaaccttcgtgatactttcttttttccctcatttaatttacttatataaatatgtttaaaatcaatcaaattattatataa |
26835878 |
T |
|
| Q |
201 |
gaaagtttaaacgatccctctcattatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
26835879 |
gaaagtttaaacgatccctctcattatt |
26835906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 26823849 - 26823893
Alignment:
| Q |
184 |
atcaaattattatataagaaagtttaaacgatccctctcattatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
26823849 |
atcaaattattatataagaaagtttaaacgattcctcccattatt |
26823893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 26805176 - 26805212
Alignment:
| Q |
184 |
atcaaattattatataagaaagtttaaacgatccctc |
220 |
Q |
| |
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||||| || |||||||||||||||||||||||||||| |
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| T |
26805176 |
atcaagttgttatataagaaagtttaaacgatccctc |
26805212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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