View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0662_high_14 (Length: 241)

Name: NF0662_high_14
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0662_high_14
NF0662_high_14
[»] chr1 (7 HSPs)
chr1 (1-230)||(235126-235355)
chr1 (22-230)||(246780-246988)
chr1 (22-230)||(251389-251594)
chr1 (23-230)||(8814358-8814565)
chr1 (32-188)||(231530-231692)
chr1 (112-174)||(4439829-4439891)
chr1 (112-161)||(18991186-18991235)
[»] chr6 (7 HSPs)
chr6 (33-161)||(7041478-7041606)
chr6 (12-161)||(7025732-7025887)
chr6 (33-161)||(7012796-7012930)
chr6 (33-161)||(7046821-7046949)
chr6 (12-161)||(9159480-9159635)
chr6 (12-161)||(9170793-9170948)
chr6 (12-105)||(7029851-7029944)
[»] chr3 (16 HSPs)
chr3 (32-150)||(9343838-9343956)
chr3 (32-150)||(9448307-9448425)
chr3 (45-161)||(41985610-41985726)
chr3 (53-174)||(9617489-9617610)
chr3 (45-161)||(9655375-9655491)
chr3 (79-174)||(9494860-9494955)
chr3 (45-161)||(9646382-9646498)
chr3 (112-174)||(9425542-9425604)
chr3 (112-161)||(9407348-9407397)
chr3 (35-174)||(9352870-9353009)
chr3 (112-174)||(9377055-9377117)
chr3 (119-161)||(9626572-9626614)
chr3 (113-147)||(16011768-16011802)
chr3 (112-161)||(9397767-9397816)
chr3 (40-105)||(9695629-9695694)
chr3 (53-161)||(41980836-41980944)
[»] chr2 (1 HSPs)
chr2 (40-174)||(20694314-20694448)
[»] chr5 (1 HSPs)
chr5 (35-161)||(18571090-18571219)
[»] chr7 (1 HSPs)
chr7 (79-161)||(3695672-3695754)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 235355 - 235126
Alignment:
Q  1 tgctgatgattatgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  235355 tgctgatgattatgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttc 235256  T
Q  101 ttgggattgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattatggataatatcttcactcgtgtgcagt 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  235255 ttggggttgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattatggataatatcttcactcgtgtgcagt 235156  T
Q  201 gtaagagctcttttttggacttggatgatg 230  Q
     |||||||||||||||||||||||||||||    
T  235155 ataagagctcttttttggacttggatgatg 235126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 246988 - 246780
Alignment:
Q  22 aaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttt 121  Q
    ||||||| || ||||||||||||||| || ||||||||| ||| |||||||||| |||||||| |||| |||||| |||||||| ||| | || || |||    
T  246988 aaggattgacttgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattt 246889  T
Q  122 tctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattatggataatatcttcactcgtgtgcagtgtaagagctcttttttggact 221  Q
    ||||||||||||| |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  246888 tctgcttctgctttggatttgtgtgttcacaaagggaattgtgtcatcattatggataatatcttcactcgtgtgcggtgtaagagctcttttttggact 246789  T
Q  222 tggatgatg 230  Q
     ||||||||    
T  246788 gggatgatg 246780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 251389 - 251594
Alignment:
Q  22 aaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttt 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||| |||||||||||||||| |||||||| | ||||||||| |||    
T  251389 aaggattaacgtgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattt 251488  T
Q  122 tctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattatggataatatcttcactcgtgtgcagtgtaagagctcttttttggact 221  Q
    |||| |||||| ||||||||||||||||  ||| ||||||  || |||||||||||||||||||||| |||   | | ||||||| ||||||||||||||    
T  251489 tctgtttctgcatcggatttgtgtgttcggaaacggaattgtgtgatcattatggataatatcttcaatcg---gtattgtaagacctcttttttggact 251585  T
Q  222 tggatgatg 230  Q
    |||||||||    
T  251586 tggatgatg 251594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 8814358 - 8814565
Alignment:
Q  23 aggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgtttt 122  Q
    |||||| || ||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||| |   | ||||| ||||    
T  8814358 aggattgacatgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcatttt 8814457  T
Q  123 ctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattatggataatatcttcactcgtgtgcagtgtaagagctcttttttggactt 222  Q
    |||||||||||| ||||||||||||||||||||||||||  || |||||||||||| ||||||||||| |||  |  | || | ||| ||||||||||||    
T  8814458 ctgcttctgctttggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatcttcacttgtgatccttctatgggctattttttggactt 8814557  T
Q  223 ggatgatg 230  Q
    ||||||||    
T  8814558 ggatgatg 8814565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 231692 - 231530
Alignment:
Q  32 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctg 131  Q
    ||||||||||| |||| |||||||| ||||||| |||||||||| ||||||||||||| |||||| |||||||| |  |||||||| |||||||||||||    
T  231692 gtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctg 231593  T
Q  132 cttc------ggatttgtgtgttcccaaagggaatttagtcatcattatggataatatcttca 188  Q
    ||||      |||||| |||||||| ||||||||||  |||||||||||||||||||| ||||    
T  231592 cttctgctttggatttatgtgttccaaaagggaattgtgtcatcattatggataatattttca 231530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 4439891 - 4439829
Alignment:
Q  112 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattat 174  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||  |||||| ||||    
T  4439891 atgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttat 4439829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 18991235 - 18991186
Alignment:
Q  112 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
    |||||||||||||||||||||||| ||||| | ||||  |||||||||||    
T  18991235 atgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaatt 18991186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 7041606 - 7041478
Alignment:
Q  33 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgc 132  Q
    ||||||| |||||||| ||||||||||||||| |||||||| | | |||||||||||| ||||| |||||||||    |||||||||| |||| ||||||    
T  7041606 tgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgtttctgc 7041507  T
Q  133 ttcggatttgtgtgttcccaaagggaatt 161  Q
    |||||||||||| ||| ||||||||||||    
T  7041506 ttcggatttgtgcgttgccaaagggaatt 7041478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 7025887 - 7025732
Alignment:
Q  12 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttc------ttggg 105  Q
    ||||| ||| ||||||| |  |||||||||||||||| ||||||||||||||| |||||||| | | |||||| ||||| ||||| |||      |||||    
T  7025887 atgattgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggg 7025788  T
Q  106 attgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
     ||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  7025787 gttggtatgttcgttttctgcttgtgcttcagatttgtgtgttgccaaagggaatt 7025732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 7012930 - 7012796
Alignment:
Q  33 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgc------tatgttcgttttctgc 126  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||||  |||| |||||||| |||       ||||||||||||||||    
T  7012930 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgc 7012831  T
Q  127 ttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
     | ||||||||||||||||||| ||||||||||||    
T  7012830 ctgtgcttcggatttgtgtgttgccaaagggaatt 7012796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 7046949 - 7046821
Alignment:
Q  33 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgc 132  Q
    |||||||||||||||| ||||||||||||||| |||||||  | | ||||||||||| |||||| ||||||||  |   |||||||||||||||||||      
T  7046949 tgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttcttt 7046850  T
Q  133 ttcggatttgtgtgttcccaaagggaatt 161  Q
    ||| ||||||| |||| ||||||||||||    
T  7046849 ttcagatttgtatgttgccaaagggaatt 7046821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 9159480 - 9159635
Alignment:
Q  12 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgc- 110  Q
    |||||| || ||||||| |  ||||||||||||| || ||||||||||||||| |||| ||  | | |||||||||||| ||||| |||||||| |||      
T  9159480 atgatcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggg 9159579  T
Q  111 -----tatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
         ||| ||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  9159580 gttggtatattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaatt 9159635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 9170948 - 9170793
Alignment:
Q  12 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttc------ttggg 105  Q
    |||||| || ||||||| |  |||||||||||||||| ||||||||||||||| |||| ||  | | |||||||||||| ||||| |||      |||||    
T  9170948 atgatcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggg 9170849  T
Q  106 attgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
     ||| ||| ||||||||||| ||||||||| |||||||||||| || |||||||||    
T  9170848 gttggtatattcgttttctgtttctgcttcagatttgtgtgtttcccaagggaatt 9170793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 7029944 - 7029851
Alignment:
Q  12 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 105  Q
    ||||||||| ||||||| |  |||||||||||||||| ||||||||||||||| |||||||| | | ||| |||||||| ||||| ||||||||    
T  7029944 atgatcgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggg 7029851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 9343956 - 9343838
Alignment:
Q  32 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttct 130  Q
    |||||||||||| |||| | ||||||||||||| |||||||  ||| |||||||||||| ||||| |||||||| | ||  |||||||||||||||||||    
T  9343956 gtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatga-atgttcgttttctgcttct 9343858  T
Q  131 gcttcggatttgtgtgttcc 150  Q
    ||||||||||||||||||||    
T  9343857 gcttcggatttgtgtgttcc 9343838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 9448425 - 9448307
Alignment:
Q  32 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttctt-gggattgctatgttcgttttctgcttct 130  Q
    |||||||||||| |||| ||||||||||| ||| |||||||  ||| |||||||||||| ||||| ||||| |||| ||   ||||||||||||||||||    
T  9448425 gtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatg-actgttcgttttctgcttct 9448327  T
Q  131 gcttcggatttgtgtgttcc 150  Q
    ||||||||||||||| ||||    
T  9448326 gcttcggatttgtgtcttcc 9448307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 41985726 - 41985610
Alignment:
Q  45 atgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgcttcggatttgt 143  Q
    |||| ||||||||||| ||| | |||||||| | |||||||||||||||||| |||||||| | ||  ||||||||||||||||||||||||||||||||    
T  41985726 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg-atgttcgttttctgcttctgcttcggatttgt 41985628  T
Q  144 gtgttcccaaagggaatt 161  Q
     ||||  |||||| ||||    
T  41985627 ctgttgtcaaaggaaatt 41985610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 9617489 - 9617610
Alignment:
Q  53 gagaagaagtggctgaagttggcaaatttaggggatagagttttcttc-ttgggattgctatgttcgttttctgcttctgcttcggatttgtgtgttccc 151  Q
    |||||||| ||| ||||||||  ||||||||||||||| ||||| ||| ||| || ||  |||||| ||||||||||||||||| |||||||||||| ||    
T  9617489 gagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatgg-atgttcattttctgcttctgcttcagatttgtgtgtttcc 9617587  T
Q  152 aaagggaatttagtcatcattat 174  Q
    ||||||||||  |||||| ||||    
T  9617588 aaagggaattgtgtcatctttat 9617610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 9655375 - 9655491
Alignment:
Q  45 atgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgcttcggatttgtg 144  Q
    |||| ||||||||||| ||| ||||||||   |||||||||||||| ||||| || |||||      ||||||||||||||| || ||||||||||||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9655474  T
Q  145 tgttcccaaagggaatt 161  Q
    |||| ||||||||||||    
T  9655475 tgtttccaaagggaatt 9655491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 9494860 - 9494955
Alignment:
Q  79 tttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattat 174  Q
    |||||||||||| ||||| |||||||| | ||  |||||||||||||||||||||||| |||||||| ||| ||||||||||||  |||||| ||||    
T  9494860 tttaggggatagggttttgttcttggggaatgg-atgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctttat 9494955  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 9646382 - 9646498
Alignment:
Q  45 atgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgcttcggatttgtg 144  Q
    |||| ||||||||||| ||| ||||||||   |||||||||||||| ||||| || || ||      ||||||||||||||| || ||||||||||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9646481  T
Q  145 tgttcccaaagggaatt 161  Q
    |||| ||||||||||||    
T  9646482 tgtttccaaagggaatt 9646498  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 9425604 - 9425542
Alignment:
Q  112 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattat 174  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||||  |||||| ||||    
T  9425604 atgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcatctttat 9425542  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 9407397 - 9407348
Alignment:
Q  112 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  9407397 atgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaatt 9407348  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 9353009 - 9352870
Alignment:
Q  35 tttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgct 133  Q
    ||||||||| |||| | ||||||||||||| ||||||||  ||| ||||||| ||| ||||| ||  |||| | ||  |||||||||||||||||||| |    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtgg-atgttcgttttctgcttctggt 9352911  T
Q  134 tcggatttgtgtgttcccaaagggaatttagtcatcattat 174  Q
    | |||| ||||| |||||||||| ||||  |||||| ||||    
T  9352910 tgggatctgtgtcttcccaaaggaaattgtgtcatctttat 9352870  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 9377117 - 9377055
Alignment:
Q  112 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattat 174  Q
    |||||||||| |||||||||||| |||| ||||| |||||||||| ||||  |||||| ||||    
T  9377117 atgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgtcatctttat 9377055  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 9626572 - 9626614
Alignment:
Q  119 ttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
    |||||||| || |||||||||||||||||| ||||||||||||    
T  9626572 ttttctgcatcagcttcggatttgtgtgtttccaaagggaatt 9626614  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 16011768 - 16011802
Alignment:
Q  113 tgttcgttttctgcttctgcttcggatttgtgtgt 147  Q
    |||||||||||||||||||||||||||||| ||||    
T  16011768 tgttcgttttctgcttctgcttcggatttgggtgt 16011802  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 9397816 - 9397767
Alignment:
Q  112 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
    |||||| ||||| ||||| |||| ||||||||||||| ||||||||||||    
T  9397816 atgttcattttccgcttcagctttggatttgtgtgttgccaaagggaatt 9397767  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 9695629 - 9695694
Alignment:
Q  40 gcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 105  Q
    |||| |||| ||||||||||||||| | |||||| | |||||||||||||| ||||| || |||||    
T  9695629 gcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttggg 9695694  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 41980944 - 41980836
Alignment:
Q  53 gagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgcttcggatttgtgtgttccc 151  Q
    |||||||| ||| | |||||| | | |||||||||||||||||| |||||||| | ||  ||||||||||| ||||||||||||  |||||| ||||  |    
T  41980944 gagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatgg-atgttcgttttttgcttctgcttcaaatttgtctgttgtc 41980846  T
Q  152 aaagggaatt 161  Q
    ||||| ||||    
T  41980845 aaaggaaatt 41980836  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 20694314 - 20694448
Alignment:
Q  40 gcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgcttcgga 138  Q
    |||| |||||||||||||||| ||| |||  ||| ||| ||| |||||||| ||||| || ||||| | ||  |||||||||||||||||||||||||||    
T  20694314 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatgg-atgttcgttttctgcttctgcttcgga 20694412  T
Q  139 tttgtgtgttcccaaagggaatttagtcatcattat 174  Q
    |||||||||| ||||||||||||  |||||| ||||    
T  20694413 tttgtgtgttgccaaagggaattgtgtcatctttat 20694448  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 18571219 - 18571090
Alignment:
Q  35 tttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagtt---ttcttcttgggattgctatgttcgttttctgcttctg 131  Q
    ||||||||| |||| ||||||||||||||| |||| ||| | | ||||||||||| ||||   || ||||| ||  ||  | |||| ||||||  |||||    
T  18571219 tttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctg 18571120  T
Q  132 cttcggatttgtgtgttcccaaagggaatt 161  Q
    ||||||||||||||||| ||||||||||||    
T  18571119 cttcggatttgtgtgtttccaaagggaatt 18571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 3695754 - 3695672
Alignment:
Q  79 tttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 161  Q
    |||||||||||||||||| ||||| ||  |  ||||||| |||||||||  |||||||||||||| || | ||||||||||||    
T  3695754 tttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggatttgtctgctgccaaagggaatt 3695672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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