View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0662_high_4 (Length: 454)

Name: NF0662_high_4
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0662_high_4
NF0662_high_4
[»] chr8 (1 HSPs)
chr8 (97-434)||(10103781-10104117)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 97 - 434
Target Start/End: Original strand, 10103781 - 10104117
Alignment:
Q  97 acattggagatgatagaacggatgaagatgcttttaaggtatgtttagttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatattt 196  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10103781 acattggagatgatagaacagatgaagatgcttttaaggtatgtttggttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatattt 10103880  T
Q  197 ccttacgacatttatttattaactactccatctattctaaaataagatcatgctactgactgtaacactcgttcaagnnnnnnnnnnnnnnnnnncataa 296  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| |||||||                  |||||    
T  10103881 ccttacgatatttatttattaactactccatctattctaaaataagatcatgctaccgactgcgacacttgttcaag-aaaaaaaaaacataaaacataa 10103979  T
Q  297 attttgttttgaaaagannnnnnnnnacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaacaaaaattgt 396  Q
    |||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10103980 attttgttttgaaaagatttttttttacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaagaaaaattgt 10104079  T
Q  397 tcaatatatgaaggttaagttgaagttgatgatgatgt 434  Q
    |||||||||||||||||||||||||||||||| |||||    
T  10104080 tcaatatatgaaggttaagttgaagttgatgaggatgt 10104117  T

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