View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0662_high_6 (Length: 445)
Name: NF0662_high_6
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 97 - 427
Target Start/End: Original strand, 10103781 - 10104111
Alignment:
| Q |
97 |
acattggagatgatagaacggatgaagatgcttttaaggtatgtttagttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatattt |
196 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10103781 |
acattggagatgatagaacagatgaagatgcttttaaggtatgtttggttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatattt |
10103880 |
T |
|
| Q |
197 |
ccttacgacatttatttattaactactccatctattctaaaataagatcatgctactgactgtaacactcgttcaagnnnnnnnnnnnnnnnnnncataa |
296 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||| |
|
|
| T |
10103881 |
ccttacgatatttatttattaactactccatctattctaaaataagatcatgctaccgactgcgacacttgttcaag-aaaaaaaaaacataaaacataa |
10103979 |
T |
|
| Q |
297 |
attttgttttgaaaaga-nnnnnnnnacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaacaaaaattgt |
395 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10103980 |
attttgttttgaaaagatttttttttacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaagaaaaattgt |
10104079 |
T |
|
| Q |
396 |
tcaatatatgaaggttaagttgaagttgatga |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10104080 |
tcaatatatgaaggttaagttgaagttgatga |
10104111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1128 times since January 2019
Visitors: 4112