View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0662_low_10 (Length: 373)
Name: NF0662_low_10
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 8738832 - 8738658
Alignment:
| Q |
40 |
gttgctcggttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgaca |
139 |
Q |
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| T |
8738832 |
gttgctcggttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgaca |
8738733 |
T |
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| Q |
140 |
aagaaggattatatcaaaaagaaaattataagaaaataattactaggtttgcaaagaaaataaagacgaggtttg |
214 |
Q |
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| T |
8738732 |
aagaaggattatatcaaaaagaaaattataagaaaataattactaggtttgcaaagaaaataaagacgaggtttg |
8738658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 14372433 - 14372505
Alignment:
| Q |
49 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgatttta |
121 |
Q |
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| T |
14372433 |
ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgatttta |
14372505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 8705294 - 8705222
Alignment:
| Q |
49 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgatttta |
121 |
Q |
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| T |
8705294 |
ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgatttta |
8705222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 8740370 - 8740276
Alignment:
| Q |
49 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgacaaaga |
143 |
Q |
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| T |
8740370 |
ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaaga |
8740276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 8723729 - 8723641
Alignment:
| Q |
49 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctga |
137 |
Q |
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| T |
8723729 |
ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctga |
8723641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 8738745 - 8738709
Alignment:
| Q |
337 |
gaacgagctgacacagaaggattatatcaaaaagaaa |
373 |
Q |
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| T |
8738745 |
gaacgagctgacaaagaaggattatatcaaaaagaaa |
8738709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 8691015 - 8690920
Alignment:
| Q |
48 |
gttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgacaaaga |
143 |
Q |
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| T |
8691015 |
gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga |
8690920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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