View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0662_low_11 (Length: 366)
Name: NF0662_low_11
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 12065353 - 12065002
Alignment:
| Q |
1 |
cattgatcatcaaacttcaaatttcatccatatccactcaacctagtagctttatttcaggaccacggcgcggctacaattgacgccacatcagcctcag |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
12065353 |
cattgatcattaaacttcaaatttcatccatatccactcaaccaagtagctttatttcaggaccacggcgtggccacaattgacgccacagcagcctcat |
12065254 |
T |
|
| Q |
101 |
aacatcaacttcatctgaccacgattctctgcaatatcaaagatcgtggcgtgaccacgttttaaaaccttgttgacaactttcttcttgaattttgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12065253 |
aacatcaacttcatctgaccacgattctctgcaatatcaaagatcgtggcgtgaccacgttttaaaaccttgttgacaactttcttcttgaattttgtct |
12065154 |
T |
|
| Q |
201 |
gcatcggctgcatttgaccacaattctctgcaatatcaaacatcctgacgcggccacattcttcaaatcttgttaacaattttgt--ctttgaacttagt |
298 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12065153 |
gcatcggctgca-ttgaccacgattctctgcaatatcaaacatcctgacgcggccacattcttcaaatcttgttaacaattttgttcttttgaacttagt |
12065055 |
T |
|
| Q |
299 |
ctctcaatggctaagatttcaaaattctttcaatttttcaacttcattgcaat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12065054 |
ctctcaatggctaagatttcaaaattctttcaatttttcaacttcatttcaat |
12065002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 18363457 - 18363485
Alignment:
| Q |
211 |
catttgaccacaattctctgcaatatcaa |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18363457 |
catttgaccacaattctctgcaatatcaa |
18363485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1139 times since January 2019
Visitors: 4112