View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0662_low_15 (Length: 316)
Name: NF0662_low_15
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 3119316 - 3119434
Alignment:
| Q |
86 |
cgattgcaaaggtttttggtgaaattgggaattaaattttaatctaagggtgtttttgtcatttaagagtggtgtcactagaaaaattcttctgctgttc |
185 |
Q |
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| T |
3119316 |
cgattgcaaaggtttttggtgaaattgggaattaaatttta-tctaagggtgtttttgtcatttaagagttgtgtcactagaaaaattcttctgctgttc |
3119414 |
T |
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| Q |
186 |
tgttttcgcgggagtccttgtt |
207 |
Q |
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| T |
3119415 |
tg--ttcgcgggagtccttgtt |
3119434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 3119233 - 3119287
Alignment:
| Q |
9 |
gagatgaactgtttttggaagaggagataacaatgaaggaaagggttttcagttg |
63 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3119233 |
gagaagaactgtttttggaagaggagataacaatgaaggaaagggttttcagttg |
3119287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 3119471 - 3119499
Alignment:
| Q |
235 |
atatactactttcttaaagaagtaattcc |
263 |
Q |
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| T |
3119471 |
atatactactttcttaaagaagtaattcc |
3119499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 9142261 - 9142323
Alignment:
| Q |
87 |
gattgcaaaggtttttggtgaaattgggaattaaattttaatctaagggtgtttttgtcattta |
150 |
Q |
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| T |
9142261 |
gattgcaaaggttttggatgaaattggaaattaaatttt-atttaagggtgtttttgtcattta |
9142323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 36011411 - 36011353
Alignment:
| Q |
92 |
caaaggtttttggtgaaattgggaattaaattttaatctaagggtgtttttgtcattta |
150 |
Q |
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||||| |||| |||||||||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
36011411 |
caaagattttgggtgaaattgggaattaaattttattttaagggtatttttgtcattta |
36011353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 36012495 - 36012453
Alignment:
| Q |
14 |
gaactgtttttggaagaggagataacaatgaaggaaagggttt |
56 |
Q |
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| T |
36012495 |
gaactgtttttggaagaagagataacaatgaaggaaagggttt |
36012453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 32902138 - 32902109
Alignment:
| Q |
99 |
ttttggtgaaattgggaattaaattttaat |
128 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32902138 |
ttttggtgaaattgggaattaaattttaat |
32902109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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