View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0662_low_22 (Length: 250)
Name: NF0662_low_22
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 38950060 - 38949902
Alignment:
| Q |
1 |
cagccgccacctatcaaaacagccaaccacactatc------tccagcagaaaaagaaaactgtagcaggccattccatataaaaacagcagaaccggac |
94 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |
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| T |
38950060 |
cagctgccacctatcaaaacagccaaccacactaagatggcatccagcagaaaaagaaaaccgtagcaggccattccatatcaaaacagcagcaccggac |
38949961 |
T |
|
| Q |
95 |
ctcattgttaccgcaataagcaatcttttggttttgggttccaacactggaagatgaac |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38949960 |
ctcattgttaccgcaataagcaatcttttggttttgggttccaacaccggaagatgaac |
38949902 |
T |
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