View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0662_low_28 (Length: 202)
Name: NF0662_low_28
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 46630832 - 46630978
Alignment:
| Q |
25 |
ggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaacaccctc |
124 |
Q |
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| T |
46630832 |
ggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaacaccctc |
46630931 |
T |
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| Q |
125 |
aaaggagaagaagagatggagttttagaagatcatcagcaacagcta |
171 |
Q |
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| T |
46630932 |
aaaggagaagaagagatggagttttagaagatcatcagcaacagcta |
46630978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 15505121 - 15505201
Alignment:
| Q |
80 |
aaatggaacagaaaatccaactactcctgtttcaacaacaccctcaaaggagaagaagagatggagttttagaagatcatcagc |
163 |
Q |
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||||||||| |||||||| |||||||| | ||||||||||| ||||||||| | ||||||||||| |||||||||||||| |
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| T |
15505121 |
aaatggaactgaaaatcctactactccaatctcaacaacacc---aaaggagaaaagaagatggagtttcagaagatcatcagc |
15505201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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