View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0662_low_5 (Length: 454)
Name: NF0662_low_5
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 97 - 434
Target Start/End: Original strand, 10103781 - 10104117
Alignment:
| Q |
97 |
acattggagatgatagaacggatgaagatgcttttaaggtatgtttagttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatattt |
196 |
Q |
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| T |
10103781 |
acattggagatgatagaacagatgaagatgcttttaaggtatgtttggttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatattt |
10103880 |
T |
|
| Q |
197 |
ccttacgacatttatttattaactactccatctattctaaaataagatcatgctactgactgtaacactcgttcaagnnnnnnnnnnnnnnnnnncataa |
296 |
Q |
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| T |
10103881 |
ccttacgatatttatttattaactactccatctattctaaaataagatcatgctaccgactgcgacacttgttcaag-aaaaaaaaaacataaaacataa |
10103979 |
T |
|
| Q |
297 |
attttgttttgaaaagannnnnnnnnacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaacaaaaattgt |
396 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10103980 |
attttgttttgaaaagatttttttttacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaagaaaaattgt |
10104079 |
T |
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| Q |
397 |
tcaatatatgaaggttaagttgaagttgatgatgatgt |
434 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
10104080 |
tcaatatatgaaggttaagttgaagttgatgaggatgt |
10104117 |
T |
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