View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0662_low_8 (Length: 407)
Name: NF0662_low_8
Description: NF0662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0662_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 43960042 - 43959676
Alignment:
| Q |
11 |
ttattcttattaatgcaaagttaatgaacttagcaaactaaatatctccttactatgaatacaaacaatacaatataatcacgcaagtgaaagaaaggaa |
110 |
Q |
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| T |
43960042 |
ttattcttattaatgcaaggttaatgaacttagcaaactaaatatctccctactatgaatacaaacaatacaatataatcacgcaagtgaaagaaaggaa |
43959943 |
T |
|
| Q |
111 |
acaaaaggaataaa-tatatttagccgatacacacaacaacatagaacaaaattaagatcaactgaaattggtgttgagtctcatatcatatcataatgg |
209 |
Q |
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| T |
43959942 |
acaaaaggaataaaatatatttagccgatacacacaacaacatagaacaaaattaagatcaactgaaattggtgatgagtctcatatcatatcata-tgg |
43959844 |
T |
|
| Q |
210 |
taatgataaaatatagatagattctgagtagagagagggaggaggggaacaaattaaaggtcaagggtaacgacacacaacaagtctccttttaggttga |
309 |
Q |
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| T |
43959843 |
taatgataaaatatagatagattctgagtagagagagggaggaggggaacaaattaaaggtcaagggtaacgacacacaacaagtctccttttaggttga |
43959744 |
T |
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| Q |
310 |
ggtgaacatatgagcataagagtgagagcaagaagtagcaccatcagaagtcctttgaaatcaataca |
377 |
Q |
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| T |
43959743 |
ggtgaacatatgagcataagagtgagagcaagaagtagcaccatcagaagtcctttgaaatcaataca |
43959676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 43963773 - 43963660
Alignment:
| Q |
265 |
aaaggtcaagggtaacgacacacaacaagtctccttttaggttgaggtgaacatatgagcataagagtgagagcaagaagtagcaccatcagaagtcctt |
364 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43963773 |
aaagttcaagggtaacgacacacaacaagtctccttttaggttgaggtgaacatatgagcataagagtgagagcaagaagtagcaccatcagaagtcctg |
43963674 |
T |
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| Q |
365 |
tgaaatcaatacat |
378 |
Q |
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| T |
43963673 |
tgaaatcaatacat |
43963660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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