View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0663_high_14 (Length: 263)
Name: NF0663_high_14
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_high_14 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 25696058 - 25695817
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25696058 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
25695959 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25695958 |
cgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagatt |
25695859 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25695858 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatg |
25695817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 24912446 - 24912687
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24912446 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcatgggaagcttcttgatggtgagatgattgc |
24912545 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24912546 |
agttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgtagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagatt |
24912645 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24912646 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatg |
24912687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25715894 - 25715650
Alignment:
| Q |
1 |
aaattgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
25715894 |
aaattgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaaggaaagcttcatgatggtgagatgat |
25715795 |
T |
|
| Q |
101 |
tgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaag |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25715794 |
tgcagtaaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaag |
25715695 |
T |
|
| Q |
201 |
attatcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25715694 |
attatcagaagttgctcaaatcttgatttcaaatcattggtgatg |
25715650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 25323348 - 25323113
Alignment:
| Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25323348 |
aagcaactaatggattaaatgagagtaatttccttggaagggggggatttggctctgtttatcagggaaagcttcttgatggtgagatgattgcagttaa |
25323249 |
T |
|
| Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25323248 |
agtaattgatttgcaatcagaggcaaaatcaaagagctttgatgtagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagt |
25323149 |
T |
|
| Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25323148 |
agttgctcaaatcttgatttcaaatcattggtgatg |
25323113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 25453674 - 25453443
Alignment:
| Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25453674 |
aagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
25453575 |
T |
|
| Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25453574 |
agtaattgatttgcaatcagaggcaaaatcaaagagctttgatgaagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagc |
25453475 |
T |
|
| Q |
210 |
agttgctcaaatcttgatttcaaatcattggt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25453474 |
agttgctcaaatcttgatttcaaatcattggt |
25453443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 25605335 - 25605094
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
25605335 |
ttgtgcaagcaacaaatggattcaatgagagtaatttccttggaaggggagcatttggatctgtttatcagggcaagcttcttgatggtgaaatgattgc |
25605236 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605235 |
cgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
25605136 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605135 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatg |
25605094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 25800976 - 25800735
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25800976 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcctgatggtgagatgattgc |
25800877 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
25800876 |
agtcaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgtcatcgaaatttggtaaagatt |
25800777 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25800776 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatg |
25800735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25311700 - 25311456
Alignment:
| Q |
1 |
aaattgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25311700 |
aaattgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcagggcaagcttcttgatggtgagatgat |
25311601 |
T |
|
| Q |
101 |
tgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaag |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
25311600 |
tgccgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaag |
25311501 |
T |
|
| Q |
201 |
attatcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25311500 |
attatcagcagttgttcaaatcttgatttcaaatcattggtgatg |
25311456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 25686342 - 25686107
Alignment:
| Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25686342 |
aagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcatgggaagcttcttgatggtgagatgattgcagttaa |
25686243 |
T |
|
| Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
25686242 |
agtaattgatttgcaatcagaggcaaaatcaatgagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctagtaaagattatcggt |
25686143 |
T |
|
| Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25686142 |
agttgctcaaatcttgattttaaatcattggtgatg |
25686107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 25647710 - 25647469
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25647710 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaaggggagcatttggatctgtttatcaggggaagcttcttgatggtgagatgattgc |
25647611 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25647610 |
agttaaagtaattgatttacaatcagaggcaaaatcaaagagctttgatgcagaatgtaatgcaatgagaaatctacgacatcgaaatctggtaaagatt |
25647511 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25647510 |
atcagaagttgatcaaatcttgatttcaaatcattggtgatg |
25647469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25341681 - 25341437
Alignment:
| Q |
1 |
aaattgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25341681 |
aaattgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcagggcaagcttcttgatggtgagatgat |
25341582 |
T |
|
| Q |
101 |
tgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaag |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||| |
|
|
| T |
25341581 |
tgccgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatatggttaag |
25341482 |
T |
|
| Q |
201 |
attatcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25341481 |
attatcagcagttgttcaaatcttgatttcaaatcattggtgatg |
25341437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 25570578 - 25570343
Alignment:
| Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
| |
|
||||||| ||||||||||||||| | || || ||||||| ||||||||||| ||||| ||| |||||| |||||||||||| |||||||| || |
|
|
| T |
25570578 |
aagcaacaaatggattcaatgagagaaaattacttggaagggggagctttggctctgtgtatcaaggggagcttcctgatggtgagattattgcagtcaa |
25570479 |
T |
|
| Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25570478 |
agtatttgatttacaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagt |
25570379 |
T |
|
| Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25570378 |
agttgctcaaatcttgatttcaaatcattggtgatg |
25570343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 24874825 - 24875060
Alignment:
| Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
| |
|
||||||| ||||||||||||||| | || || ||||||| ||||||||||| ||||| ||| |||||| |||||||||||| |||||||| || |
|
|
| T |
24874825 |
aagcaacaaatggattcaatgagagaaaattacttggaagggggagctttggctctgtgtatcaaggggagcttcctgatggtgagattattgcagtcaa |
24874924 |
T |
|
| Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
24874925 |
agtatttgatttacaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgtcatcgaaatctggtaaagattatcagt |
24875024 |
T |
|
| Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24875025 |
agttgctcaaatcttgatttcaaatcattggtgatg |
24875060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 25476359 - 25476118
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||| |||||| || | ||| |||||||||||| |
|
|
| T |
25476359 |
ttgtgcaagcaactaatggattcaatgagtgtaatttacttggacgggggggctttggctctgtatatcgggggaatctccgcaatgatgagatgattgc |
25476260 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||| | |||||||||||||||||| ||||| || |||||| |
|
|
| T |
25476259 |
ggttaaagtaattgatttgcagtcagaggcaaaagcaaagagctttgatgtagaatgcaatgcaacgagaaatctacgacatcgaaatcttgttaagatt |
25476160 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
25476159 |
atttgtagttgttcaaatctcgatttcaaatcattggtgatg |
25476118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 23258890 - 23258661
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||| ||||||||||||||| | ||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
23258890 |
ttgtgcaagcaacaaatggattcaatgagagcaatttacttggaacggggggctttggctctgtgtatcaagggaagcttcctgatggtgagatgattgc |
23258791 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
23258790 |
agttaaagtatttgatttgcaaaca------------aagagctttgatgcagaatgcaatgcaatgagaaatctacggcatcgaaatctggttaagatt |
23258703 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
23258702 |
atcagcagttgttccaatcttgatttcaaatcattggtgatg |
23258661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 22900172 - 22900413
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||| |||||||| |||||| ||||||| ||||||| |||||| ||||| ||| ||||||||||| |||||||||| |||| |
|
|
| T |
22900172 |
ttgtgcaagcaacaaatggatttaatgagagtaatttgcttggaaggggaggatttgggtctgtgtatgaggggaagctttcaaatggtgagatatttgc |
22900271 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
|||||||| ||||||||| | || ||| ||||| | |||||||||| |||||||||||| ||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
22900272 |
ggttaaagtgattgatttgaactcggaggaaaaattacggagctttgatcgagaatgcaatgcattgagaaatctacggcatcgaaatctggttaagatt |
22900371 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
||||| ||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
22900372 |
atcagcagttgttcaaatattgatttcaaagcattggtgatg |
22900413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 16406 - 16647
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16406 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagtgggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
16505 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
16506 |
cgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatttggtaaagatt |
16605 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16606 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatg |
16647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 57 - 245
Target Start/End: Original strand, 3945 - 4133
Alignment:
| Q |
57 |
tttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcag |
156 |
Q |
| |
|
||||| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| || |
|
|
| T |
3945 |
tttggttctgtgtatgaggggaagcttcctaatggtgagatgattgcagttaaagtaattgatttgcaatctgaggcaaaatcaaagagttttgatgtag |
4044 |
T |
|
| Q |
157 |
aatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtgatg |
245 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4045 |
aatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtgatg |
4133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 10324545 - 10324313
Alignment:
| Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||| || ||||||| ||||||||||| |||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
10324545 |
ttgtggaagcaacaaatggtttcaatgagagtaaattacttggaagggggagctttggctctgtgtatcaggggatgcttcctgacggtgagatgattgc |
10324446 |
T |
|
| Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
| |
|
||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10324445 |
agtcaaagtaattgatt------cagaggcaaaatcaacaagctttgatgcagaatgcaatgtaatgagaaatctacgacatcgaaatctggttaagatt |
10324352 |
T |
|
| Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtg |
242 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
10324351 |
atcagtagttgttcaaatcatgatttcaaagcattggtg |
10324313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 14412619 - 14412528
Alignment:
| Q |
144 |
agctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatc |
235 |
Q |
| |
|
||||||||||||||||||||||| ||| | || || || ||| | ||||| || | |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
14412619 |
agctttgatgcagaatgcaatgcaatgcgcaacctccggcatagaaatctcgtccaaattatcagtagttgttcaaatcctgatttcaaatc |
14412528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 5101666 - 5101757
Alignment:
| Q |
144 |
agctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatc |
235 |
Q |
| |
|
||||||||||||||||||||||| ||| | || || |||||| | ||||| || | ||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
5101666 |
agctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatgagtagttgttcaaatcctgatttcaaatc |
5101757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 5119225 - 5119316
Alignment:
| Q |
144 |
agctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatc |
235 |
Q |
| |
|
||||||||||||||||||||||| ||| | || || |||||| | ||||| || | ||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
5119225 |
agctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatgagtagttgttcaaatcctgatttcaaatc |
5119316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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