View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0663_high_17 (Length: 255)
Name: NF0663_high_17
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_high_17 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 48668680 - 48668906
Alignment:
| Q |
29 |
aaaaagaaggtagctaaagtgtaacaattgaaggccagctggtagctgattagatatgacatattcattgttcacacaagatagaagaaggcacaacatg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48668680 |
aaaaagaaggtagctaaagtgtaacaattgaaggccagctggtagctgattagatatgacatattcattgttcacacaagatagaagaaggcacaacatg |
48668779 |
T |
|
| Q |
129 |
gatcgatataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagtaataaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48668780 |
gatcgatataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagtaataaa |
48668879 |
T |
|
| Q |
229 |
aagatagcagttccccctcctctatga |
255 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
48668880 |
aagatagcagttccccctcctctatga |
48668906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 777 times since January 2019
Visitors: 4099