View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0663_high_20 (Length: 249)

Name: NF0663_high_20
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0663_high_20
NF0663_high_20
[»] chr6 (1 HSPs)
chr6 (1-227)||(25520886-25521112)
[»] chr5 (8 HSPs)
chr5 (26-227)||(41711675-41711876)
chr5 (14-227)||(42125513-42125726)
chr5 (23-217)||(34230688-34230882)
chr5 (37-227)||(42130738-42130928)
chr5 (23-218)||(34238743-34238938)
chr5 (45-227)||(41569924-41570106)
chr5 (72-215)||(41446146-41446289)
chr5 (147-215)||(41433422-41433490)
[»] chr4 (1 HSPs)
chr4 (47-215)||(11120299-11120467)
[»] chr3 (1 HSPs)
chr3 (17-215)||(8524980-8525181)
[»] chr2 (1 HSPs)
chr2 (45-219)||(12250342-12250516)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25520886 - 25521112
Alignment:
Q  1 ctataaattctgaatcttcttatccttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25520886 ctataaattctgaatcttcttatccttgtgatgaatctcttctgaaaacagcaacatggaaatatgggactgattgctgctcatggcatggtgtcacatg 25520985  T
Q  101 cgacgccacttttggtcgcgtgattggcctcaaccttggctgcgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatatt 200  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  25520986 cgacaccacttttggtcgcgtgattggcctcaaccttggctgtgaaggcctccaaggtatattccatcctaatagtactcttttccatcttgctcatatt 25521085  T
Q  201 aaaaaactcaacctttcttacgatgat 227  Q
     |||||||||||||||||||| |||||    
T  25521086 caaaaactcaacctttcttacaatgat 25521112  T

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Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 41711675 - 41711876
Alignment:
Q  26 ttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgatt 125  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||  ||||||||||| ||| ||   | |||||||||| ||    
T  41711675 ttgtggtgaacctcttctaaaaacaacaacatggaaaaatgagactgattgttgctcatggcccggtgtcacatgtgacaccgtctatggtcgcgtggtt 41711774  T
Q  126 ggcctcaaccttggctgcgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacgatg 225  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||| |  ||| |||||||||||||||| |||    
T  41711775 ggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttgttcatctccaaacactcaacctttcttacaatg 41711874  T
Q  226 at 227  Q
    ||    
T  41711875 at 41711876  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 42125726 - 42125513
Alignment:
Q  14 atcttcttatccttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccactttt 113  Q
    ||||| |||| ||||||||| ||||||||| |||||| ||||||||||| ||| ||||||||||||||||||| |||||||||| || ||  |||    |    
T  42125726 atctttttattcttgtgatggatctcttctgaaaacagcaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgtgataccatcact 42125627  T
Q  114 ggtcgcgtgattggcctcaaccttggctgcgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacc 213  Q
     ||| ||||||||||||||| |||||||| |||||||||||||||| | | |||||||| ||||| |||||  |||||| |||| || ||| ||||||||    
T  42125626 cgtcacgtgattggcctcaatcttggctgtgaaggccttcaaggtaaactacatcctaacagtacccttttcaatcttgttcatcttcaaacactcaacc 42125527  T
Q  214 tttcttacgatgat 227  Q
    ||||| || |||||    
T  42125526 tttctaacaatgat 42125513  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 34230688 - 34230882
Alignment:
Q  23 tccttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtg 122  Q
    |||||||| | |||||| | | |||||| ||||||||||| ||| |||||||||||||||||||||||||||||| || ||| ||   | ||||| |||     
T  34230688 tccttgtgttaaatctcctatgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtc 34230787  T
Q  123 attggcctcaaccttggctgcgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttc 217  Q
    |||||||| ||||||||||| |||||| ||||||||||| | |||||||||||||| ||||| |||||||||||  || |||  |||||||||||    
T  34230788 attggccttaaccttggctgtgaaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttc 34230882  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 42130928 - 42130738
Alignment:
Q  37 ctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaacct 136  Q
    ||||||| |||||| ||||||||||| ||| ||||||||||||||||||| |||| ||||| || ||| |    | ||||| |||||||| |||||||||    
T  42130928 ctcttcttaaaacagcaacatggaaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaacct 42130829  T
Q  137 tggctgcgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacgatgat 227  Q
    |||||| |||||||||  ||||| |||  ||||||||||||| ||||||||||||| |||| |  ||| |||||||||||||||| |||||    
T  42130828 tggctgtgaaggccttacaggtacattcaatcctaatagtaccctttttcatcttgttcatctccaaacactcaacctttcttacaatgat 42130738  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 34238743 - 34238938
Alignment:
Q  23 tccttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtg 122  Q
    |||||||| | |||||| | | |||||| ||||||||||| ||| |||||||||||||||||||||||||||||| || ||| ||   | ||||| |||     
T  34238743 tccttgtgttaaatctcctatgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtc 34238842  T
Q  123 attggcctcaaccttggctgcgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttct 218  Q
    |||||||| |||||||| || |||||| ||||||||||| | |||||||||||||| |||||  || ||| |||| |  ||| |||||||||||||    
T  34238843 attggccttaaccttggttgtgaaggctttcaaggtatactccatcctaatagtacccttttcaatattgttcatctccaaacactcaacctttct 34238938  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 41569924 - 41570106
Alignment:
Q  45 aaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaaccttggctgcg 144  Q
    |||||| |||||||||||  ||||||  |||| || ||||||||||||||||| ||||||||    | ||||||||||||||| ||| |||||||||| |    
T  41569924 aaaacatcaacatggaaaattgagacaaattgttgttcatggcatggtgtcacgtgcgacgctgtctctggtcgcgtgattggtctcgaccttggctgtg 41570023  T
Q  145 aaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacgatgat 227  Q
    || |||||||||||| | || ||||||| |  || |||||||||||||||||| |  ||  ||||||||||||| || |||||    
T  41570024 aatgccttcaaggtaaaatttatcctaacaacactctttttcatcttgctcatctccaatcactcaacctttctcacaatgat 41570106  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 41446289 - 41446146
Alignment:
Q  72 gattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaaccttggctgcgaaggccttcaaggtatatttcatccta 171  Q
    ||||| |||||||||| ||||||||| || ||| | | || ||||| ||| |||||| |  ||||  ||||| | | ||||||||||||  ||||||| |    
T  41446289 gattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgaccttcaaggtattattcatccca 41446190  T
Q  172 atagtacactttttcatcttgctcatattaaaaaactcaacctt 215  Q
    | |||||||||||||||||| ||||| |  ||| ||||||||||    
T  41446189 acagtacactttttcatctttctcatctccaaacactcaacctt 41446146  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 41433490 - 41433422
Alignment:
Q  147 ggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctt 215  Q
    ||||||||||||||  ||||||| || |||||||||||||||||| ||||| |  ||| ||||||||||    
T  41433490 ggccttcaaggtatgattcatcccaacagtacactttttcatctttctcatctccaaacactcaacctt 41433422  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 11120467 - 11120299
Alignment:
Q  47 aacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaaccttggctgcgaa 146  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||||| |||  | ||||||||||||||||||||| |||||||| |||    
T  11120467 aacaacaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaa 11120368  T
Q  147 ggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctt 215  Q
    || |||||||| ||||| ||||| |||||||| ||||| ||||||| |||| |  ||| ||||||||||    
T  11120367 ggtcttcaaggcatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaacctt 11120299  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 8525181 - 8524980
Alignment:
Q  17 ttcttatccttgtgatgaatctcttcta---aaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccactttt 113  Q
    |||||||  |||||||||||||| |||    |||||| ||||||||||| |||||| |||||||||||||||| |||||||||| || ||| |||    |    
T  8525181 ttcttatttttgtgatgaatctcgtcttttgaaaacagcaacatggaaaaatgagattgattgctgctcatgggatggtgtcacgtgtgacaccatcagt 8525082  T
Q  114 ggtcgcgtgattggcctcaaccttggctgcgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacc 213  Q
    |||| |||||||||||||||||||||||| ||||| |||||||| ||| |  ||||||| ||||| ||||| ||||||||| ||||| ||||||||||||    
T  8525081 ggtcacgtgattggcctcaaccttggctgtgaaggtcttcaaggcatactcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacc 8524982  T
Q  214 tt 215  Q
    ||    
T  8524981 tt 8524980  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 12250516 - 12250342
Alignment:
Q  45 aaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaaccttggctgcg 144  Q
    |||||| |||||||| || ||| ||||||||||||||||||||||||||||||||| ||| | |  | |||||  |||||||||||| ||||||||   |    
T  12250516 aaaacagcaacatggcaaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggcctcgaccttggcgatg 12250417  T
Q  145 aaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttctt 219  Q
    |||||||| | |||||||| || ||||||||||| |||||  ||||||||||| |  ||| ||||||||||||||    
T  12250416 aaggccttgatggtatattacaacctaatagtacccttttcgatcttgctcatctccaaacactcaacctttctt 12250342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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