View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0663_high_21 (Length: 240)

Name: NF0663_high_21
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0663_high_21
NF0663_high_21
[»] chr5 (5 HSPs)
chr5 (1-141)||(26354060-26354200)
chr5 (143-238)||(26354377-26354472)
chr5 (1-141)||(9815879-9816019)
chr5 (143-240)||(9815605-9815702)
chr5 (150-231)||(38435046-38435127)
[»] chr3 (29 HSPs)
chr3 (2-141)||(20015335-20015474)
chr3 (1-141)||(20007405-20007545)
chr3 (143-240)||(20015651-20015748)
chr3 (150-238)||(26647577-26647665)
chr3 (144-223)||(20033785-20033864)
chr3 (18-141)||(26647849-26647972)
chr3 (150-240)||(19838964-19839054)
chr3 (144-223)||(19812871-19812950)
chr3 (11-141)||(20033477-20033607)
chr3 (1-134)||(26654000-26654133)
chr3 (150-238)||(20046693-20046781)
chr3 (144-223)||(19951712-19951791)
chr3 (150-240)||(19956655-19956745)
chr3 (150-231)||(19849576-19849657)
chr3 (153-238)||(20036063-20036148)
chr3 (150-238)||(26653721-26653809)
chr3 (150-238)||(19819133-19819221)
chr3 (11-135)||(19951975-19952099)
chr3 (150-238)||(19832443-19832531)
chr3 (150-238)||(19854073-19854161)
chr3 (150-238)||(19858645-19858733)
chr3 (144-238)||(19990098-19990192)
chr3 (11-135)||(19839244-19839368)
chr3 (150-238)||(24839431-24839519)
chr3 (45-134)||(19813135-19813224)
chr3 (159-240)||(19944288-19944369)
chr3 (57-141)||(19849841-19849925)
chr3 (26-95)||(20006412-20006481)
chr3 (11-135)||(19956935-19957059)
[»] chr1 (4 HSPs)
chr1 (143-235)||(1717796-1717888)
chr1 (35-133)||(1718073-1718171)
chr1 (1-89)||(38483818-38483906)
chr1 (150-238)||(38483546-38483632)
[»] chr8 (5 HSPs)
chr8 (158-240)||(11544641-11544723)
chr8 (150-238)||(22689130-22689218)
chr8 (25-102)||(22685497-22685574)
chr8 (150-238)||(22655773-22655861)
chr8 (65-135)||(22655520-22655590)
[»] chr2 (1 HSPs)
chr2 (158-238)||(39191441-39191521)
[»] chr7 (2 HSPs)
chr7 (150-238)||(12579545-12579633)
chr7 (150-188)||(12581884-12581922)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 26354060 - 26354200
Alignment:
Q  1 tcagcaggaacatcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttag 100  Q
    ||||||||||||||||||||||| |||  | |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  26354060 tcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttag 26354159  T
Q  101 cttttcatacatgagatctatgtttccttgaactttcactt 141  Q
     |||||  ||||||| ||| ||||||||||| |||||||||    
T  26354160 tttttccaacatgagctctgtgtttccttgagctttcactt 26354200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 26354377 - 26354472
Alignment:
Q  143 tctaggaacataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  26354377 tctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctc 26354472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 9816019 - 9815879
Alignment:
Q  1 tcagcaggaacatcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttag 100  Q
    ||||||||||||||| ||||||  ||||||| |||||||| || ||||||||||||||||||||||||||||| | |||||||||||| |||||||| |     
T  9816019 tcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaa 9815920  T
Q  101 cttttcatacatgagatctatgtttccttgaactttcactt 141  Q
     ||||| |||||||||||| |  ||||||||||||| ||||    
T  9815919 tttttcctacatgagatctgtacttccttgaactttgactt 9815879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 9815702 - 9815605
Alignment:
Q  143 tctaggaacataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctcgg 240  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  9815702 tctaggcacataagttggaacatcttgatccatttcaaattgcatagcaactctatgtggcaaatactgctctatagagtcgaatccaacaagctcgg 9815605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 38435046 - 38435127
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaa 231  Q
    ||||||||||||||||||||||| |||| ||||| |||||   |||||||||| ||||| || || ||||||||||| ||||    
T  38435046 acataacttggaacatcttgatcaattctaaattacatagcatctctatgtggtagatattgttcaatagagtcaaatccaa 38435127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 20015335 - 20015474
Alignment:
Q  2 cagcaggaacatcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagc 101  Q
    |||||||| ||||||| |||||||||||| | ||||||| || |||||||||||||  |||| ||||||||||| ||||||||||||| ||||||||||     
T  20015335 cagcaggagcatcatcgcaaaattttccatacttaagaaggtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagt 20015434  T
Q  102 ttttcatacatgagatctatgtttccttgaactttcactt 141  Q
    ||||| || ||||| |||||||||||||||||||||||||    
T  20015435 ttttcctagatgaggtctatgtttccttgaactttcactt 20015474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 20007405 - 20007545
Alignment:
Q  1 tcagcaggaacatcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttag 100  Q
    |||||||||||||||||||||||||||||||||  ||||   | ||||||||||||||||||| ||||||||||| |||||||| | | |||||||||||    
T  20007405 tcagcaggaacatcatcacaaaattttccaaaaacaagagcatcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttag 20007504  T
Q  101 cttttcatacatgagatctatgtttccttgaactttcactt 141  Q
     || || |||||||||||||||| |||||||| || |||||    
T  20007505 attgtcctacatgagatctatgtctccttgaaattgcactt 20007545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 20015651 - 20015748
Alignment:
Q  143 tctaggaacataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctcgg 240  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||||| |||||||||||||    
T  20015651 tctaggcacatcacctggaacatcttgatccattccaaattgcatagcaactctgtgtggcaaatactgctctatagagtcaaatccaacaagctcgg 20015748  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 26647665 - 26647577
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||| ||| |||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| || |||||||||||    
T  26647665 acatcactcggaacatcttgatccattccaaattgcatagcaactctatgtggcagatactgttctatagagtcgaatccaacaagctc 26647577  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 20033785 - 20033864
Alignment:
Q  144 ctaggaacataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtc 223  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  20033785 ctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctctatagagtc 20033864  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 26647972 - 26647849
Alignment:
Q  18 acaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagcttttcatacatgagat 117  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||  |||| |||||| |||||||||||| |||| ||||| |||||| ||||  |  |    
T  26647972 acaaaattttccaaaaataagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaact 26647873  T
Q  118 ctatgtttccttgaactttcactt 141  Q
    |||||||||||||||||| |||||    
T  26647872 ctatgtttccttgaacttgcactt 26647849  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 19839054 - 19838964
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctcgg 240  Q
    ||||||| ||||||||||||||||||||| ||||||||||  ||||||||||| ||||| ||||||||||| ||||| |||||||||||||    
T  19839054 acataacctggaacatcttgatccattccgaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaacaagctcgg 19838964  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 19812950 - 19812871
Alignment:
Q  144 ctaggaacataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtc 223  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  19812950 ctaggcacataacttggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagagtc 19812871  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 20033477 - 20033607
Alignment:
Q  11 catcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagcttttcatac 110  Q
    ||||||||||||||||||||||  ||||| ||| ||||||||||||||||||| |||||| |||| || ||||||||||||||  |||||| |||| ||     
T  20033477 catcatcacaaaattttccaaacataagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttcctat 20033576  T
Q  111 atgagatctatgtttccttgaactttcactt 141  Q
    | ||| ||||  ||| ||||||||| |||||    
T  20033577 acgaggtctacattttcttgaacttgcactt 20033607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 26654133 - 26654000
Alignment:
Q  1 tcagcaggaacatcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttag 100  Q
    ||||||||||||||| |||||||||||||| || || || ||| ||||||||||||||||||| |||||||||||  || |||   || |||| || |||    
T  26654133 tcagcaggaacatcagcacaaaattttccataaatatgagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctag 26654034  T
Q  101 cttttcatacatgagatctatgtttccttgaact 134  Q
    |||| | |||||||| |||| |||||||||||||    
T  26654033 ctttccctacatgagctctaggtttccttgaact 26654000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 20046781 - 20046693
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||| ||||||||||| || | ||||||||||||||  ||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  20046781 acataactcggaacatcttggtcaagtccaaattgcatagaaactctatgtggaagatactgctctatagactcaaatccaacaagctc 20046693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 19951791 - 19951712
Alignment:
Q  144 ctaggaacataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtc 223  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  19951791 ctaggcacataactcggaacatcttgatccattgcaaattgcatagcaactctatgtggaagatattgctctatagagtc 19951712  T

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Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 19956745 - 19956655
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctcgg 240  Q
    |||||||  |||||||||||||| ||||||||||||||||  ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||    
T  19956745 acataacccggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaaccagctcgg 19956655  T

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Target: chr3; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 19849657 - 19849576
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaa 231  Q
    ||||||||||||||||||||||||||||| ||||||| ||  ||||||||||| ||||| ||||||||||| ||||| ||||    
T  19849657 acataacttggaacatcttgatccattccgaattgcaaagagactctatgtgggagatattgctctatagactcaaatccaa 19849576  T

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Target: chr3; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 20036063 - 20036148
Alignment:
Q  153 taacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    ||||| |||||||||||||| ||||||||||||||||  ||||||||||| ||||| ||||||||||| ||||| ||||| |||||    
T  20036063 taactcggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaaccagctc 20036148  T

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Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 26653809 - 26653721
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||||||||||||||| || ||||||||||||||||  ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||    
T  26653809 acataacttggaacatcttggtcaattccaaattgcatagcaactctatgtggaagatattgctcaatagactcaaatccaactagctc 26653721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 19819221 - 19819133
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||  |||||||||||||| |||||||| |||||||  ||||||||||| ||||| |||||||| || ||||| |||||||||||    
T  19819221 acataaccaggaacatcttgatcaattccaaactgcatagcaactctatgtggaagatattgctctatggactcaaaaccaacaagctc 19819133  T

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Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 19952099 - 19951975
Alignment:
Q  11 catcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagcttttcatac 110  Q
    ||||||||||||| ||||||||   |||| | | ||||  ||||| ||||||| ||||||||||| ||||| |||||| |||| |||||||||||| |||    
T  19952099 catcatcacaaaaatttccaaagacaagagtttcaacacaattggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctac 19952000  T
Q  111 atgagatctatgtttccttgaactt 135  Q
    ||||| ||||| ||| |||| ||||    
T  19951999 atgaggtctatcttttcttggactt 19951975  T

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Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 19832531 - 19832443
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||  |||||||||||||| |||||||  |||||||  ||||||||||| ||||| |||||||| || ||||| |||||||||||    
T  19832531 acataaccaggaacatcttgatcaattccaatctgcatagcaactctatgtggaagatattgctctatggactcaaaaccaacaagctc 19832443  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 19854161 - 19854073
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||  |||||||||||||| | |||||||||| |||  ||||||||||| ||||| ||||||||| | ||||||||||| |||||    
T  19854161 acataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctc 19854073  T

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Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 19858733 - 19858645
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||  |||||||||||||| | | ||||||||||||  ||||||||||| ||||| ||||||||| | ||||||||||| |||||    
T  19858733 acataaccaggaacatcttgatcaaattcaaattgcatagcaactctatgtggtagatattgctctataaactcaaacccaactagctc 19858645  T

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Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 19990192 - 19990098
Alignment:
Q  144 ctaggaacataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    ||||| || |||||||||| ||||||||||||||||||||||| ||  ||||||||||| ||||| ||  ||| | ||||||  |||||||||||    
T  19990192 ctaggcacgtaacttggaatatcttgatccattccaaattgcaaagcaactctatgtgggagatattgaactacaaagtcaattccaacaagctc 19990098  T

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Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 19839368 - 19839244
Alignment:
Q  11 catcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagcttttcatac 110  Q
    |||||||||||| |||||||||| ||||| | | ||| |||||||||| |||| ||||| |||||  ||| ||| ||| |||| |||||   |||| |||    
T  19839368 catcatcacaaacttttccaaaagtaagagtatcaaccagattgggagaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctac 19839269  T
Q  111 atgagatctatgtttccttgaactt 135  Q
    ||||| |||| | ||||||||||||    
T  19839268 atgaggtctacgcttccttgaactt 19839244  T

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Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 24839431 - 24839519
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||  |||||||||||||| | ||| ||||||||||  ||||||||||| ||||| || |||||||| ||||| ||||| |||||    
T  24839431 acataaccaggaacatcttgatcaaatccgaattgcatagcaactctatgtggtagatattgttctatagactcaaatccaactagctc 24839519  T

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Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 19813224 - 19813135
Alignment:
Q  45 aacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagcttttcatacatgagatctatgtttccttgaact 134  Q
    ||||||||||||||||||||||||||||||| || || || ||| |||||||| |  ||||| |||||| | ||  ||||| ||||||||    
T  19813224 aacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacatgtggtcggtgttttcttgaact 19813135  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 19944369 - 19944288
Alignment:
Q  159 ggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctcgg 240  Q
    |||||||||||||| | ||| ||||||||||  ||||||| ||| ||||| || |||||||| ||||| ||||| |||||||    
T  19944369 ggaacatcttgatcaaatccgaattgcatagcaactctatatggtagatattgttctatagactcaaatccaactagctcgg 19944288  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 19849925 - 19849841
Alignment:
Q  57 aggaaattcaggtggaacatcaacatcattactacttctgttagcttttcatacatgagatctatgtttccttgaactttcactt 141  Q
    ||||||| || |||||| | |||||||||||| ||||||||||||||||| ||||  |  ||| ||||| ||||||||| |||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctacacaatgtctttgttttcttgaacttgcactt 19849841  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 20006412 - 20006481
Alignment:
Q  26 ttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttct 95  Q
    |||||||| ||||| ||  ||||||||||||||||||| ||  ||||||| |||||||| ||| ||||||    
T  20006412 ttccaaaaataagagtgccaacaagattgggaggaaatccatctggaacaccaacatcaataccacttct 20006481  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 19957059 - 19956935
Alignment:
Q  11 catcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagcttttcatac 110  Q
    ||||||||||||  ||| ||||| ||||| | | |||||||||||||| |||| ||||| |||||  ||| ||  ||| ||||||||||   |||| |||    
T  19957059 catcatcacaaacattttcaaaagtaagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgttaaactttcctac 19956960  T
Q  111 atgagatctatgtttccttgaactt 135  Q
     |||| |||| | ||||||||||||    
T  19956959 gtgaggtctacgcttccttgaactt 19956935  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 1717888 - 1717796
Alignment:
Q  143 tctaggaacataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaag 235  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||    
T  1717888 tctaggcacatcacttggaacatcttgatccattccaaattgcatagcaactctatgtggcagatactgctctatagagtcaaatccaacaag 1717796  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 1718171 - 1718073
Alignment:
Q  35 taagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagcttttcatacatgagatctatgtttccttgaac 133  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||| ||||| || |||| ||||| ||||||    
T  1718171 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 1718073  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 38483906 - 38483818
Alignment:
Q  1 tcagcaggaacatcatcacaaaattttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattact 89  Q
    |||||||||||||||||||| ||||||  ||||||| ||| || ||||||||  ||||||||||||||||||||| |||||||||||||    
T  38483906 tcagcaggaacatcatcacagaattttaaaaaattaggaaggtcaacaagatctggaggaaattcaggtggaacaccaacatcattact 38483818  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 38483632 - 38483546
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||||| |||||||| |||||| |||||||||||||  ||||||  || || ||||||||||||||  ||||| | |||||||||    
T  38483632 acataacttgtaacatcttaatccataccaaattgcatagcaactcta--tgacaaatactgctctatagtctcaaatctaacaagctc 38483546  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 11544723 - 11544641
Alignment:
Q  158 tggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctcgg 240  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||||    
T  11544723 tggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctcaatagactcaaaaccaactagctcgg 11544641  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 22689130 - 22689218
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||  ||||||||||||||||||||||| ||| |||  ||||||||||| ||||| ||||||||||| ||||| ||||| |||||    
T  22689130 acataaccaggaacatcttgatccattccaaactgcctagcaactctatgtggtagatattgctctatagactcaaatccaactagctc 22689218  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 22685497 - 22685574
Alignment:
Q  25 tttccaaaattaagaatgtgaacaagattgggaggaaattcaggtggaacatcaacatcattactacttctgttagct 102  Q
    ||||||||||||||  ||| ||||||||||  || |||| ||||||||||| |||||||||||| |||||||||||||    
T  22685497 tttccaaaattaagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttagct 22685574  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 22655773 - 22655861
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||  |||||||||||||| ||||||||||||||||  |||||| |||| ||||| |  |||||||| ||||| |||||||||||    
T  22655773 acataacccggaacatcttgatcaattccaaattgcatagaaactctacgtggaagatatttttctatagactcaaatccaacaagctc 22655861  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 22655520 - 22655590
Alignment:
Q  65 caggtggaacatcaacatcattactacttctgttagcttttcatacatgagatctatgtttccttgaactt 135  Q
    ||||| ||||| |||| ||| ||| ||||||||||  ||| | |||||||| |||||||||||||||||||    
T  22655520 caggtagaacaccaacttcagtaccacttctgttaaatttccctacatgaggtctatgtttccttgaactt 22655590  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 39191441 - 39191521
Alignment:
Q  158 tggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||    
T  39191441 tggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctcaatagactcaaaaccaactagctc 39191521  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 12579545 - 12579633
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcatagttactctatgtggcagatactgctctatagagtcaaacccaacaagctc 238  Q
    |||||||||| || |||||| || ||||||||||| ||||  ||||||||| | ||||| ||||||||||  | ||| |||||||||||    
T  12579545 acataacttgaaatatcttggtcaattccaaattgtatagacactctatgtcgaagatattgctctataggcttaaatccaacaagctc 12579633  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 12581922 - 12581884
Alignment:
Q  150 acataacttggaacatcttgatccattccaaattgcata 188  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  12581922 acataacttgaaacatcttgatcaattccaaattgcata 12581884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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