View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0663_high_22 (Length: 226)
Name: NF0663_high_22
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_high_22 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5415138 - 5414913
Alignment:
| Q |
1 |
tcatcatgtatgttcccaccacttctgctaccagctattttcaatatccaacaaaagtaaannnnnnngtcatttcaaatcaaattttcaagctctatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5415138 |
tcatcatgtatgttcccaccacttctgctaccagctattttcaatatccaacaaaagtaaatttttttgtcatttcaaatcaaattttcaagctctatat |
5415039 |
T |
|
| Q |
101 |
aaatgaaattaaaatgatccaaaagaagactaaaaacttaatgaatgccttctagagaatgaaataaaagttaccttcttgagaaggggcacagagtctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5415038 |
aaatgaaattaaaatgatccaaaagaagactaaaaacttaatgaatgccttctagagaatgaaataaaagttaccttcttgagaaggggcacagagtctt |
5414939 |
T |
|
| Q |
201 |
tgatgcctgattcttcacaattttgt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5414938 |
tgatgcctgattcttcacaattttgt |
5414913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 995 times since January 2019
Visitors: 4105