View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_high_4 (Length: 482)
Name: NF0663_high_4
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_high_4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 482
Target Start/End: Original strand, 54314642 - 54315096
Alignment:
| Q |
30 |
attacgacaccaaaatcagaattagaaagctaagaaatatcttgcaacacaagaaacatctaaaaacaatccaaatagagtcctttaataatcatcttgt |
129 |
Q |
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| T |
54314642 |
attacgacaccaaaatcagaattagaaagctaagaaatatcttgcaacacaagaaacatctaaaaacaatccaaatagagtcctttaataatcatcttgt |
54314741 |
T |
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| Q |
130 |
aatcagtggaagctataaatgcatacggatcctacaatgaatgtaaaggtacctaattgttccgatagattttggccttttctgacttctttgaaaaaga |
229 |
Q |
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| T |
54314742 |
aatcagtggaagctataaatgcatacggatcctacaatgaatgtaaaggtacctaattgttccgatagattttggccttttctgacttctttgaaaaaga |
54314841 |
T |
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| Q |
230 |
aacatcctacttattaaattatgaccataaaagaaaacacaaataaaattaatcaaacatcctaattatgatcaattcactcc--aagnnnnnnnnnnnn |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54314842 |
aacatcctacttattaaattatgaccataaaagaaaacacaaataaaattaatcaaacatcctaattatgatcaattcactccaaaaaaaaaaaacaata |
54314941 |
T |
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| Q |
328 |
nngtgcaagttagtaagctgcactcacctaaaattattataacagagtttgcaactttctatcggtgagaaattgattccttatcataagaaattttttg |
427 |
Q |
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| T |
54314942 |
aggtgcaagttagcaagctacactcacctaaaattattataacagattttgcaactttctatcggtgagtaattgattccttatcataagcaattttttg |
54315041 |
T |
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| Q |
428 |
accacattaaaatacagttgcgatctagactcaatttccagtgactttctccttc |
482 |
Q |
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| T |
54315042 |
accaaattaaaatacagttgcgttctagactcaatttccagcggctttctccttc |
54315096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 54316082 - 54316183
Alignment:
| Q |
330 |
gtgcaagttagtaagctgcactcacctaaaattattataacagagtttgcaactttctatcggtgagaaattgattccttatcataagaaattttttgac |
429 |
Q |
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| T |
54316082 |
gtgcaagttagcaagttgcacccacctagaattattataacaaagtttccaactttctatcggtgagtaattgattcattatcataaacaattttttgac |
54316181 |
T |
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| Q |
430 |
ca |
431 |
Q |
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|| |
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| T |
54316182 |
ca |
54316183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 54315953 - 54315992
Alignment:
| Q |
250 |
atgaccataaaagaaaacacaaataaaattaatcaaacat |
289 |
Q |
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| T |
54315953 |
atgaccataaaagaaaacacaaataaaattaatcaaacat |
54315992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 444
Target Start/End: Complemental strand, 34064611 - 34064531
Alignment:
| Q |
365 |
tataacagagtttgcaactttctatcggtgagaaattgattccttatcataag-aaattttttgaccacattaaaatacag |
444 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||| ||||||| || |||||| |||| |||||||||||| |
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| T |
34064611 |
tatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaatttttttaaccaaattaaaatacag |
34064531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 444
Target Start/End: Complemental strand, 56459484 - 56459404
Alignment:
| Q |
365 |
tataacagagtttgcaactttctatcggtgagaaattgattccttatcataag-aaattttttgaccacattaaaatacag |
444 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||| ||||||| || |||||| |||| |||||||||||| |
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| T |
56459484 |
tatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaattttttttaccaaattaaaatacag |
56459404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 444
Target Start/End: Original strand, 19402659 - 19402739
Alignment:
| Q |
365 |
tataacagagtttgcaactttctatcggtgagaaattgattccttatcataag-aaattttttgaccacattaaaatacag |
444 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||| ||||||| || |||||| |||| |||||||||||| |
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| T |
19402659 |
tatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaattttttttaccaaattaaaatacag |
19402739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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