View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0663_high_5 (Length: 454)
Name: NF0663_high_5
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_high_5 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 220 - 454
Target Start/End: Original strand, 3723485 - 3723719
Alignment:
| Q |
220 |
ataaaaaatatatttcaatgaaaaataatagggaagaaagatcaccagcctcaaaatgtcagcatgaagtttttcttctgcctcaatagctttgtcaaga |
319 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723485 |
ataataaatatatttcaatgaaaaataacagggaagtaagatcaccagcctcaaaatgtcagcatgaagtttttcttctgcctcaatagctttgtcaaga |
3723584 |
T |
|
| Q |
320 |
attccacttgatgtagaactatagacaaaaaggtgaactaaatatgggcaatcaattacttctagcaccacaaagaattgtgaatttaatcaaccaatag |
419 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723585 |
actccacttgatgtagaactatagacaaaaaggtgaactaaatatgggcaatcaattacttctaacaccacaaagaattgtgaatttaatcaaccaatag |
3723684 |
T |
|
| Q |
420 |
gagttcatcatcgaccttgccaataattatttaaa |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723685 |
gagttcatcatcgaccttgccaataattatttaaa |
3723719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 3723315 - 3723459
Alignment:
| Q |
83 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723315 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaagaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
3723414 |
T |
|
| Q |
183 |
catggttctgttcaaacatggatgtatttattttcatataaaaaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723415 |
catggttctgttcaaacatggatgtatttattttcatataaaaaa |
3723459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 37186402 - 37186505
Alignment:
| Q |
83 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
182 |
Q |
| |
|
||||||||||||||||||| ||| || || |||||||||||| |||| |||| | ||||||||| || ||||| ||||||| ||| | |||||||| | |
|
|
| T |
37186402 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataggtctttgtctttgctgataattcaaggtatccttcaa |
37186501 |
T |
|
| Q |
183 |
catg |
186 |
Q |
| |
|
|||| |
|
|
| T |
37186502 |
catg |
37186505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 423 times since January 2019
Visitors: 4084