View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0663_high_6 (Length: 454)

Name: NF0663_high_6
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0663_high_6
NF0663_high_6
[»] chr3 (13 HSPs)
chr3 (1-406)||(54315071-54315467)
chr3 (2-169)||(13825175-13825350)
chr3 (136-229)||(45034820-45034913)
chr3 (136-169)||(177703-177736)
chr3 (138-194)||(12742-12798)
chr3 (244-298)||(10817-10871)
chr3 (136-230)||(18911991-18912085)
chr3 (136-166)||(23585282-23585312)
chr3 (136-166)||(23600105-23600135)
chr3 (136-169)||(18942879-18942912)
chr3 (366-406)||(13825590-13825630)
chr3 (362-406)||(52561027-52561071)
chr3 (138-194)||(55151018-55151074)
[»] chr2 (10 HSPs)
chr2 (19-232)||(26172853-26173065)
chr2 (36-232)||(21833639-21833836)
chr2 (109-228)||(20725658-20725779)
chr2 (64-231)||(15738000-15738171)
chr2 (242-406)||(15738243-15738399)
chr2 (300-406)||(29902188-29902294)
chr2 (93-194)||(40612676-40612780)
chr2 (136-167)||(26393968-26393999)
chr2 (136-166)||(19508722-19508752)
chr2 (138-194)||(2777324-2777380)
[»] chr7 (9 HSPs)
chr7 (2-232)||(11381493-11381728)
chr7 (2-232)||(11404898-11405127)
chr7 (136-232)||(45075465-45075563)
chr7 (138-195)||(31593998-31594055)
chr7 (136-169)||(42014345-42014378)
chr7 (129-169)||(45415296-45415336)
chr7 (138-193)||(10554791-10554846)
chr7 (129-169)||(3940111-3940151)
chr7 (138-230)||(6272735-6272827)
[»] scaffold0097 (1 HSPs)
scaffold0097 (109-228)||(29487-29608)
[»] chr8 (9 HSPs)
chr8 (64-231)||(18700956-18701127)
chr8 (242-406)||(18701198-18701354)
chr8 (129-232)||(2870111-2870208)
chr8 (138-194)||(8316554-8316610)
chr8 (138-194)||(20477498-20477554)
chr8 (139-230)||(41270008-41270099)
chr8 (136-166)||(42095639-42095669)
chr8 (128-169)||(28637458-28637499)
chr8 (362-406)||(41269798-41269842)
[»] scaffold0013 (1 HSPs)
scaffold0013 (129-232)||(62616-62714)
[»] scaffold0079 (2 HSPs)
scaffold0079 (300-406)||(45603-45709)
scaffold0079 (128-195)||(46533-46596)
[»] chr4 (4 HSPs)
chr4 (300-406)||(16347152-16347258)
chr4 (128-195)||(16346265-16346328)
chr4 (136-169)||(12024758-12024791)
chr4 (143-230)||(39388686-39388773)
[»] chr6 (7 HSPs)
chr6 (84-169)||(23058925-23059013)
chr6 (131-232)||(19268620-19268721)
chr6 (136-232)||(2946284-2946380)
chr6 (335-406)||(23058640-23058711)
chr6 (131-232)||(33523589-33523690)
chr6 (136-167)||(5620531-5620562)
chr6 (362-406)||(2946174-2946218)
[»] chr5 (6 HSPs)
chr5 (138-195)||(37980146-37980203)
chr5 (136-232)||(7263090-7263186)
chr5 (243-298)||(19876619-19876674)
chr5 (136-166)||(10825596-10825626)
chr5 (138-188)||(24169698-24169748)
chr5 (362-406)||(19876519-19876563)
[»] chr1 (7 HSPs)
chr1 (137-230)||(42463506-42463598)
chr1 (138-194)||(50915063-50915119)
chr1 (136-167)||(46192174-46192205)
chr1 (136-230)||(31387674-31387767)
chr1 (138-194)||(18243135-18243191)
chr1 (362-406)||(31387467-31387511)
chr1 (362-406)||(46192432-46192476)
[»] scaffold0688 (1 HSPs)
scaffold0688 (138-195)||(5607-5664)
[»] scaffold1043 (1 HSPs)
scaffold1043 (136-169)||(2825-2858)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 54315071 - 54315467
Alignment:
Q  1 ctcaatttccagtggctttctccttccatttttcccccacatttgaacctgttttacacatacttaaacaaattttttcactcttttcattcaatttcaa 100  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54315071 ctcaatttccagcggctttctccttccatttttcccc-acatttgaacttgttttacacatacttaaacaaattttttcactcttttcattcaatttcaa 54315169  T
Q  101 attcatcaatataaaaggtacgaagtaattaacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  54315170 attcatcaatataaaaggtacgaagtaattaacatgataaaattaaaacgcaagaaataatataaaaggtatgtacgtaaatatcatagaaatatcacaa 54315269  T
Q  201 gatacgaataatgtcataataatacatcaccaactacctatgatgcctctgccctctgcgttgcctgacaaactgacacgtaagggcagggcgaccagac 300  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||        |    
T  54315270 gatacgaataatgtcataataatacatcaccaactgactatgatgcctctgccctctgcgctgcctggcaaactgatacgtaagggcaggg--------c 54315361  T
Q  301 gaccagtattgtcaatcctaatcgccttctaaataatctcctatgtagtcatcttgccgctcctggccacaatattatcatctatctgcaccacatccct 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54315362 gaccaatattgtcaatcctaatcgccttctaaataatctcctatgtagtcatcttgccgctcctggccacaatattatcatctatctgcaccacatccct 54315461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 13825175 - 13825350
Alignment:
Q  2 tcaatttccagtggctttctccttccatttttcccccacatttgaacctgttttacacatac----ttaaacaaattttttcactctttt-cattcaatt 96  Q
    |||||||||||  ||||||||||||||||||||||| |||||||  | ||||||| ||||||    || ||||||||||||||||||||| ||| |||||    
T  13825175 tcaatttccagcagctttctccttccatttttcccc-acatttgtccatgttttatacataccattttgaacaaattttttcactctttttcatccaatt 13825273  T
Q  97 tcaaattcatcaatataaaaggtacga----agtaattaacatgataaaattaaaacgcaagaaataatataaaagg 169  Q
     ||||||||||||||||||||||||||    | || |||||| ||||||| |||||| |||||||||||||||||||    
T  13825274 gcaaattcatcaatataaaaggtacgaaaataatatttaacaagataaaaataaaacacaagaaataatataaaagg 13825350  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 45034913 - 45034820
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatca 229  Q
    |||||||||||||||||||||||||||||||||| || |  | |||| ||||| ||||| || || ||||| |  |||||||||| ||||||||    
T  45034913 gataaaattaaaacgcaagaaataatataaaaggtatgtcggaaaatgtcatacaaataccaaaatatacggaacatgtcataattatacatca 45034820  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 177703 - 177736
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaagg 169  Q
    ||||||||||||||||||||||||||||||||||    
T  177703 gataaaattaaaacgcaagaaataatataaaagg 177736  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 12798 - 12742
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    ||||||||||| |||||||||||||||||| | |  ||||||||| |||||||||||    
T  12798 taaaattaaaatgcaagaaataatataaaacgtacgtacgtaaatgtcatagaaata 12742  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 10871 - 10817
Alignment:
Q  244 tgcctctgccctctgcgttgcctgacaaactgacacgtaagggcagggcgaccag 298  Q
    ||||||||||| |||||  ||||||||| |||| | |||||||||||||||||||    
T  10871 tgcctctgccccctgcgccgcctgacaatctgataagtaagggcagggcgaccag 10817  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 18912085 - 18911991
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcac 230  Q
    |||||||||||||||||||| ||||||||||||| || |  | |||| ||||| ||||| || ||  |||| |  |||||||||| |||||||||    
T  18912085 gataaaattaaaacgcaagatataatataaaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcac 18911991  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 23585312 - 23585282
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaa 166  Q
    |||||||||||||||||||||||||||||||    
T  23585312 gataaaattaaaacgcaagaaataatataaa 23585282  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 23600135 - 23600105
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaa 166  Q
    |||||||||||||||||||||||||||||||    
T  23600135 gataaaattaaaacgcaagaaataatataaa 23600105  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 18942879 - 18942912
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaagg 169  Q
    ||||||||||||||||||||||||||| ||||||    
T  18942879 gataaaattaaaacgcaagaaataatacaaaagg 18942912  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 13825590 - 13825630
Alignment:
Q  366 gccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    ||||||| ||||||| |||||||||| ||||||||||||||    
T  13825590 gccacaacattatcagctatctgcacgacatccctgatgat 13825630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 52561071 - 52561027
Alignment:
Q  362 cctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||    
T  52561071 cctggccacaatatcatcagctatatgcaccacatcccggatgat 52561027  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 55151074 - 55151018
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    ||||| |||||||||||||||||||||||| | |  |||||||||  ||||||||||    
T  55151074 taaaactaaaacgcaagaaataatataaaacgtacgtacgtaaatgacatagaaata 55151018  T

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Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 26173065 - 26172853
Alignment:
Q  19 tctccttccatttttcccccacatttgaacctgttttacacatacttaaacaaattttttcactcttttcattcaatttcaaattcatcaatataaaagg 118  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  26173065 tctccttccattttttccc-acatttgaacatgttttacacatacttcaacaatttttttcactcttttcatccaatttcaaattcatcaatataaaagg 26172967  T
Q  119 tacgaagtaattaacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| | |||||||||||||||| || |||  ||||||||    
T  26172966 tacgaagtaattaacatgataaaattaaaacgcaagaaataatataaaaggtacgtacgtaaatgttatagaaatatcacaaggtatgaaacatgtcata 26172867  T
Q  219 ataatacatcacca 232  Q
    ||||||||||||||    
T  26172866 ataatacatcacca 26172853  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 21833836 - 21833639
Alignment:
Q  36 cccacatttgaacctgtttt-acacatacttaaacaaattttttcactcttttcattcaatttcaaattcatcaatataaaaggtacgaagtaattaaca 134  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21833836 cccacatttgaacatgtttttacacatacttaaacaaattttttcactcctttcatccaatttcaaattcatcaatataaaaggtacgaagtaattaaca 21833737  T
Q  135 tgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcacca 232  Q
    ||||||||||||||| ||||||||| |||||||||||| || |||| | |||||||||||||||||| ||| |||| || ||||||||||||||||||    
T  21833736 tgataaaattaaaacacaagaaatagtataaaaggcatgtatgtaattgtcatagaaatatcacaaggtacaaatagtggcataataatacatcacca 21833639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 20725779 - 20725658
Alignment:
Q  109 atataaaaggtacgaagtaatt--aacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacg 206  Q
    |||||||||||||||| |||||  |||||||||||| |||||| ||||||||||||||||||| |  ||||||||| |||||||||||||||||| ||||    
T  20725779 atataaaaggtacgaaataattttaacatgataaaaataaaacacaagaaataatataaaaggtacgtacgtaaatgtcatagaaatatcacaaggtacg 20725680  T
Q  207 aataatgtcataataatacatc 228  Q
    ||| ||||||||||||||||||    
T  20725679 aatgatgtcataataatacatc 20725658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 15738000 - 15738171
Alignment:
Q  64 ttaaacaaattttttcactctttt-cattcaatttcaaattcatcaatataaaaggtacgaagtaat---taacatgataaaattaaaacgcaagaaata 159  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||| ||| | | ||||   ||||||||||||||||| ||||||||||||    
T  15738000 ttaaacaaaatttttcactctttttcatccaatttcaaattcatgaatataaaatgtatggaataatatttaacatgataaaattaatacgcaagaaata 15738099  T
Q  160 atataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcacc 231  Q
    |||||||||| || |||| |||| |||||||||||  | ||  ||||||  |||||||||||||||||||||    
T  15738100 atataaaaggtatgtacgaaaatgtcatagaaatactaaaatgtacgaaacatgtcataataatacatcacc 15738171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 15738243 - 15738399
Alignment:
Q  242 gatgcctctgccctctgcgttgcctgacaaactgacacgtaagggcagggcgaccagacgaccagtattgtcaatcctaatcgccttctaaataatctcc 341  Q
    ||||||||||||| ||||| |||||| ||| |||| ||||||||||||||||||| |        || || |||||| |||| ||| ||||| | | |||    
T  15738243 gatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccgg--------tactgccaatccgaatcacctcctaaacagtatcc 15738334  T
Q  342 tatgtagtcatcttgccgctcctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    | | ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||    
T  15738335 tctttagtcatcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgat 15738399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 29902294 - 29902188
Alignment:
Q  300 cgaccagtattgtcaatcctaatcgccttctaaataatctcctatgtagtcatcttgccgctcctggccacaatattatcatctatctgcaccacatccc 399  Q
    ||||||||| || |||||| |||| ||| || ||  ||||||| | ||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||    
T  29902294 cgaccagtagtgccaatccgaatcacctcctgaaatatctcctctttagtcatctcgccactcctgaccacaatattatcagctatctgcaccacatccc 29902195  T
Q  400 tgatgat 406  Q
     ||||||    
T  29902194 ggatgat 29902188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 40612676 - 40612780
Alignment:
Q  93 aatttcaaattcatcaatataaaaggtacgaagtaat---taacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatag 189  Q
    |||| |||||| || ||||||||| ||||||| ||||   ||||| ||||||| |||||||||||||||||||||||||| || |  | |||| ||||||    
T  40612676 aattgcaaattaatgaatataaaacgtacgaaataatatttaacaggataaaagtaaaacgcaagaaataatataaaaggtatgtcggaaaatgtcatag 40612775  T
Q  190 aaata 194  Q
    |||||    
T  40612776 aaata 40612780  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 26393999 - 26393968
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaa 167  Q
    ||||||||||||||||||||||||||||||||    
T  26393999 gataaaattaaaacgcaagaaataatataaaa 26393968  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 19508752 - 19508722
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaa 166  Q
    |||||||||||||||||||||||||||||||    
T  19508752 gataaaattaaaacgcaagaaataatataaa 19508722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 2777380 - 2777324
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    |||||||||||||||| ||||||||||||| | |  |||||| || |||||||||||    
T  2777380 taaaattaaaacgcaaaaaataatataaaacgtacgtacgtatatgtcatagaaata 2777324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 11381493 - 11381728
Alignment:
Q  2 tcaatttccagtggctttctccttccatttttcccccacatttgaacctgttttacacatact----taaacaaattttttcactc-ttttcattcaatt 96  Q
    |||| ||||| | ||||||||||||| ||||||||| || ||||||| ||||| | |||||||    | |||| |||||||||||| ||||||| |||||    
T  11381493 tcaaattccaatagctttctccttccctttttcccc-acgtttgaacatgttt-atacatactattttgaacacattttttcactcattttcatccaatt 11381590  T
Q  97 tcaaattcatcaatataaaaggtacgaagtaatt--aacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    | |||||||||||||||||||||||||| |||||  ||||| |||||| |||||||||||||||||||||||||| |  |||| |||| |||||||||||    
T  11381591 taaaattcatcaatataaaaggtacgaaataattttaacataataaaaataaaacgcaagaaataatataaaaggtacgtacgaaaatgtcatagaaata 11381690  T
Q  195 tcacaagatacgaataatgtcataataatacatcacca 232  Q
    ||||||| || |||||||||||||||||||||||||||    
T  11381691 tcacaaggtatgaataatgtcataataatacatcacca 11381728  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 11404898 - 11405127
Alignment:
Q  2 tcaatttccagtggctttctccttccatttttcccccacatttgaacctgttttacacatact----taaacaaattttttcactc-ttttcattcaatt 96  Q
    |||| ||||| | ||||||||||||| ||||||||| || ||||||| ||||| | |||||||    | |||| |||||||||||| ||||||| |||||    
T  11404898 tcaaattccaatagctttctccttccctttttcccc-acgtttgaacatgttt-atacatactattttgaacacattttttcactcattttcatccaatt 11404995  T
Q  97 tcaaattcatcaatataaaaggtacgaagtaatt--aacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    |||||||||| ||||||||||||| ||| |||||  ||||| |||||| ||||| ||||||||||||||||| || |  |||| |||| |||||||||||    
T  11404996 tcaaattcataaatataaaaggtatgaaataattttaacataataaaaataaaatgcaagaaataatataaatggtacgtacgaaaatgtcatagaaata 11405095  T
Q  195 tcacaagatacgaataatgtcataataatacatcacca 232  Q
    |||||||       ||||||||||||||||||||||||    
T  11405096 tcacaag------gtaatgtcataataatacatcacca 11405127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 45075465 - 45075563
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaaga--tacgaataatgtcataataatacatcacca 232  Q
    |||||||||||||||||||||||||||||||||| ||||    |||| |||||||||||  | || |  ||||||  |||||||||| |||||||||||    
T  45075465 gataaaattaaaacgcaagaaataatataaaaggtatatcgaaaaatgtcatagaaataaaaaaaaatgtacgaaacatgtcataattatacatcacca 45075563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 31594055 - 31593998
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatat 195  Q
    ||||||||||||||||||||||||||||||   |  ||||||||| ||||||||||||    
T  31594055 taaaattaaaacgcaagaaataatataaaacaaacgtacgtaaatgtcatagaaatat 31593998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 42014378 - 42014345
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaagg 169  Q
    ||||||||||||||||||||||||||||||||||    
T  42014378 gataaaattaaaacgcaagaaataatataaaagg 42014345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 45415336 - 45415296
Alignment:
Q  129 ttaacatgataaaattaaaacgcaagaaataatataaaagg 169  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  45415336 ttaacaggataaaattaaaatgcaagaaataatataaaagg 45415296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 10554846 - 10554791
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaat 193  Q
    |||||||||||| ||||||||||||||||| | | ||| |||||| ||||||||||    
T  10554846 taaaattaaaacacaagaaataatataaaacgtacataagtaaatttcatagaaat 10554791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 3940151 - 3940111
Alignment:
Q  129 ttaacatgataaaattaaaacgcaagaaataatataaaagg 169  Q
    |||||||||||||| ||||||  ||||||||||||||||||    
T  3940151 ttaacatgataaaaataaaacagaagaaataatataaaagg 3940111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 6272735 - 6272827
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcac 230  Q
    |||||||||||||||| ||||||||||||| | || |  | |||| ||||| ||||| || ||  ||||||  |||||||||| |||||||||    
T  6272735 taaaattaaaacgcaaaaaataatataaaaagtatgtcggaaaatgtcatacaaataccaaaatgtacgaaacatgtcataattatacatcac 6272827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 29608 - 29487
Alignment:
Q  109 atataaaaggtacgaagtaatt--aacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacg 206  Q
    |||||||||||||||| |||||  |||||||||||| |||||| ||||||||||||||||||| |  ||||||||| |||||||||||||||||| ||||    
T  29608 atataaaaggtacgaaataattttaacatgataaaaataaaacacaagaaataatataaaaggtacgtacgtaaatgtcatagaaatatcacaaggtacg 29509  T
Q  207 aataatgtcataataatacatc 228  Q
    ||| ||||||||||||||||||    
T  29508 aatgatgtcataataatacatc 29487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 18700956 - 18701127
Alignment:
Q  64 ttaaacaaattttttcactctttt-cattcaatttcaaattcatcaatataaaaggtacgaagtaat---taacatgataaaattaaaacgcaagaaata 159  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||| ||| | | ||||   ||||||||||||||||| ||||||||||||    
T  18700956 ttaaacaaaatttttcactctttttcatccaatttcaaattcatgaatataaaatgtatggaataatatttaacatgataaaattaatacgcaagaaata 18701055  T
Q  160 atataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcacc 231  Q
    |||||||||| || |||| |||| |||||||||||  | ||  ||||||  |||||||||||||||||||||    
T  18701056 atataaaaggtatgtacgaaaatgtcatagaaatactaaaatgtacgaaacatgtcataataatacatcacc 18701127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 18701198 - 18701354
Alignment:
Q  242 gatgcctctgccctctgcgttgcctgacaaactgacacgtaagggcagggcgaccagacgaccagtattgtcaatcctaatcgccttctaaataatctcc 341  Q
    ||||||||||||| ||||| |||||| ||| |||| ||||||||||||||||||| |        || || |||||| |||| ||| ||||| | | |||    
T  18701198 gatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccgg--------tactgccaatccgaatcacctcctaaacagtatcc 18701289  T
Q  342 tatgtagtcatcttgccgctcctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    | | ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||    
T  18701290 tctttagtcatcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgat 18701354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 2870111 - 2870208
Alignment:
Q  129 ttaacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatc 228  Q
    |||||||||||||| ||||||||||||||||||||||  ||    |||| |||| || ||||||||||||||| ||| ||| ||||||||||||||||||    
T  2870111 ttaacatgataaaaataaaacgcaagaaataatataa--gg----tacgaaaatgtcgtagaaatatcacaaggtacaaatcatgtcataataatacatc 2870204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 8316554 - 8316610
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    |||||||||||||||||||||||||||||| | |  ||||||||| |||||||||||    
T  8316554 taaaattaaaacgcaagaaataatataaaacgtacgtacgtaaatgtcatagaaata 8316610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 20477498 - 20477554
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    |||||||||||||||||||||||||||||| | |  ||||||||| |||||||||||    
T  20477498 taaaattaaaacgcaagaaataatataaaacgtacgtacgtaaatgtcatagaaata 20477554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 41270099 - 41270008
Alignment:
Q  139 aaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcac 230  Q
    ||||||||||||||||||||||||||||||| || |  | |||| ||||| ||||| || ||  |||| |  |||||||||| |||||||||    
T  41270099 aaaattaaaacgcaagaaataatataaaaggtatgtcggaaaatgtcatataaataccaaaatgtacggaacatgtcataattatacatcac 41270008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Original strand, 42095639 - 42095669
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaa 166  Q
    |||||||||||||||||||||||||||||||    
T  42095639 gataaaattaaaacgcaagaaataatataaa 42095669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 28637458 - 28637499
Alignment:
Q  128 attaacatgataaaattaaaacgcaagaaataatataaaagg 169  Q
    ||||||||||||||| ||||| |||||||||||| |||||||    
T  28637458 attaacatgataaaaataaaatgcaagaaataatttaaaagg 28637499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 41269842 - 41269798
Alignment:
Q  362 cctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||    
T  41269842 cctggccacaatatcatcagctatatgcaccacatcccggatgat 41269798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 62616 - 62714
Alignment:
Q  129 ttaacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatc 228  Q
    ||||||||||||||  |||||||||||||||||||||||||    |||| |||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  62616 ttaacatgataaaaacaaaacgcaagaaataatataaaagg----tacgaaaatgtcatagaaatatcacaaggtacgaa-aatgtcataataatacatc 62710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 45709 - 45603
Alignment:
Q  300 cgaccagtattgtcaatcctaatcgccttctaaataatctcctatgtagtcatcttgccgctcctggccacaatattatcatctatctgcaccacatccc 399  Q
    ||||||||| || |||||| |||| ||| || || |||||||| | ||||||||| |||||||||||||||||||| |||| |||||||||||| || ||    
T  45709 cgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccacaatatcatcagctatctgcaccatattcc 45610  T
Q  400 tgatgat 406  Q
     ||||||    
T  45609 ggatgat 45603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 46596 - 46533
Alignment:
Q  128 attaacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatat 195  Q
    ||||||||||||||| |||||||||||||||||| |||||||    | ||||||| ||||||||||||    
T  46596 attaacatgataaaaataaaacgcaagaaataatttaaaagg----tgcgtaaatgtcatagaaatat 46533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 16347152 - 16347258
Alignment:
Q  300 cgaccagtattgtcaatcctaatcgccttctaaataatctcctatgtagtcatcttgccgctcctggccacaatattatcatctatctgcaccacatccc 399  Q
    ||||||||| || |||||| |||| ||| || || |||||||| | ||||||||| |||||||||||||||||||| |||| |||||||||||| || ||    
T  16347152 cgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccacaatatcatcagctatctgcaccatattcc 16347251  T
Q  400 tgatgat 406  Q
     ||||||    
T  16347252 ggatgat 16347258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 16346265 - 16346328
Alignment:
Q  128 attaacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatat 195  Q
    ||||||||||||||| |||||||||||||||||| |||||||    | ||||||| ||||||||||||    
T  16346265 attaacatgataaaaataaaacgcaagaaataatttaaaagg----tgcgtaaatgtcatagaaatat 16346328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 12024758 - 12024791
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaagg 169  Q
    ||||||||||||||||||||||||||||||||||    
T  12024758 gataaaattaaaacgcaagaaataatataaaagg 12024791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 39388686 - 39388773
Alignment:
Q  143 ttaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcac 230  Q
    ||||||||||||||||||||||||||| |  | || |||| |||||||||||  | ||  ||||||  |||||||||| |||||||||    
T  39388686 ttaaaacgcaagaaataatataaaaggtacgtccgaaaatgtcatagaaataagaaaatgtacgaaacatgtcataattatacatcac 39388773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 23059013 - 23058925
Alignment:
Q  84 ttttcattcaatttcaaattcatcaatataaaaggtacgaagtaat---taacatgataaaattaaaacgcaagaaataatataaaagg 169  Q
    ||||||| ||||| ||||||| | ||||||||| ||||||| ||||   ||||||||||||| |||| |||||||||||||||||||||    
T  23059013 ttttcatccaattgcaaattcgtgaatataaaatgtacgaaataatatttaacatgataaaaataaagcgcaagaaataatataaaagg 23058925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 19268620 - 19268721
Alignment:
Q  131 aacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcac 230  Q
    |||| |||||||||||||||||||||||||||||||||| | || || |||| |||||||||||  | ||  |||| |  |||||||||| |||||||||    
T  19268620 aacaagataaaattaaaacgcaagaaataatataaaaggtacatccgaaaatgtcatagaaatacgaaaatgtacggaacatgtcataattatacatcac 19268719  T
Q  231 ca 232  Q
    ||    
T  19268720 ca 19268721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 2946380 - 2946284
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcacca 232  Q
    ||||||||||||| |||||||||||||||||||| || |  | |||| ||||||||||| || || ||||| |  |||||||||| ||| |||||||    
T  2946380 gataaaattaaaatgcaagaaataatataaaaggtatgtcgggaaatgtcatagaaataccaaaatatacggaacatgtcataattatatatcacca 2946284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 23058711 - 23058640
Alignment:
Q  335 aatctcctatgtagtcatcttgccgctcctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    |||||||| | |||||||||  |||||| |||||||||||| |||| |||||||||||||||| | ||||||    
T  23058711 aatctcctctttagtcatctcaccgctcatggccacaatatcatcagctatctgcaccacatctcggatgat 23058640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 33523690 - 33523589
Alignment:
Q  131 aacatgataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcac 230  Q
    |||| ||||||||||||||| |||||||||||||||||| || |  | |||| |||||||||||  | ||  |||| |  |||||||||| |||||||||    
T  33523690 aacaagataaaattaaaacgtaagaaataatataaaaggtatgtcggaaaatgtcatagaaatacgaaaatgtacggaacatgtcataattatacatcac 33523591  T
Q  231 ca 232  Q
    ||    
T  33523590 ca 33523589  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 5620562 - 5620531
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaa 167  Q
    ||||||||||||||||||||||||||||||||    
T  5620562 gataaaattaaaacgcaagaaataatataaaa 5620531  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 2946218 - 2946174
Alignment:
Q  362 cctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||    
T  2946218 cctggccacaatatcatcaactatatgcaccacatcccggatgat 2946174  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 37980146 - 37980203
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatat 195  Q
    |||||||||||||||||||||||||||||| | |  ||||||||| ||||||||||||    
T  37980146 taaaattaaaacgcaagaaataatataaaacgtacgtacgtaaatgtcatagaaatat 37980203  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 7263186 - 7263090
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcacca 232  Q
    |||||||||||||||||||||||||||||||||| || |  | |||| |||||||||||  | ||  |||| |  |||||||||| |||||||||||    
T  7263186 gataaaattaaaacgcaagaaataatataaaaggtatgtcggaaaatgtcatagaaataaaaaaatgtacggaacatgtcataattatacatcacca 7263090  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 19876674 - 19876619
Alignment:
Q  243 atgcctctgccctctgcgttgcctgacaaactgacacgtaagggcagggcgaccag 298  Q
    |||||||  ||||||||| |||||| ||| |||| |||||||||||||||||||||    
T  19876674 atgcctcgcccctctgcgctgcctggcaatctgatacgtaagggcagggcgaccag 19876619  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Original strand, 10825596 - 10825626
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaa 166  Q
    |||||||||||||||||||||||||||||||    
T  10825596 gataaaattaaaacgcaagaaataatataaa 10825626  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 24169748 - 24169698
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcata 188  Q
    |||||||||||||||||||||||||||||| | |  ||||||||| |||||    
T  24169748 taaaattaaaacgcaagaaataatataaaacgtacgtacgtaaatgtcata 24169698  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 19876563 - 19876519
Alignment:
Q  362 cctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||    
T  19876563 cctggccacaatatcatcagctatatgcaccacatcccggatgat 19876519  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 42463506 - 42463598
Alignment:
Q  137 ataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcac 230  Q
    |||||||||||||||||||||||||||||| || || |  | |||||||||||||||| || ||  ||||||  |||||||||| |||||||||    
T  42463506 ataaaattaaaacgcaagaaataatataaa-ggtatgttggaaaatatcatagaaataccaaaatgtacgaaacatgtcataattatacatcac 42463598  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 50915119 - 50915063
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    |||||||||||||||||||||||||||||| | |  ||||||||  |||||||||||    
T  50915119 taaaattaaaacgcaagaaataatataaaacgtacgtacgtaaaggtcatagaaata 50915063  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 46192174 - 46192205
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaa 167  Q
    ||||||||||||||||||||||||||||||||    
T  46192174 gataaaattaaaacgcaagaaataatataaaa 46192205  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 31387767 - 31387674
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatatcacaagatacgaataatgtcataataatacatcac 230  Q
    ||||| ||||||||||||||||||||||||| || || |  | |||| |||||||||||||| ||  |||| |  |||||||||| |||||||||    
T  31387767 gataatattaaaacgcaagaaataatataaa-ggtatgtcggaaaatgtcatagaaatatcaaaatgtacggaacatgtcataattatacatcac 31387674  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 18243191 - 18243135
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaata 194  Q
    |||||||||||| ||||||||||||||||| | |  ||| ||||| |||||||||||    
T  18243191 taaaattaaaactcaagaaataatataaaatgtacgtacataaatgtcatagaaata 18243135  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 31387511 - 31387467
Alignment:
Q  362 cctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||    
T  31387511 cctggccacaatatcatcagctatatgcaccacatcccggatgat 31387467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 46192432 - 46192476
Alignment:
Q  362 cctggccacaatattatcatctatctgcaccacatccctgatgat 406  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||    
T  46192432 cctggccacaatatcatcaactatatgcaccacatcccggatgat 46192476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 5664 - 5607
Alignment:
Q  138 taaaattaaaacgcaagaaataatataaaaggcatatacgtaaatatcatagaaatat 195  Q
    ||||||||||||||||||||||||||||||   |  ||||||||| ||||||||||||    
T  5664 taaaattaaaacgcaagaaataatataaaacaaacgtacgtaaatgtcatagaaatat 5607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 2825 - 2858
Alignment:
Q  136 gataaaattaaaacgcaagaaataatataaaagg 169  Q
    |||||||||||||| |||||||||||||||||||    
T  2825 gataaaattaaaacacaagaaataatataaaagg 2858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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