View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_1 (Length: 598)
Name: NF0663_low_1
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 952494 - 951945
Alignment:
| Q |
1 |
atgaacatgatgaaggccgatgccatggtcgtaggagaccccccaaatgcagaggatatccgtttacctaactattctttttctcgtcctccgattcctc |
100 |
Q |
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| T |
952494 |
atgaacatgatgaaggccgatgccatggtcgtaggagaccccccaaacgcagaggacatccgtttacctaactattctttttctcgtcctcccattcctc |
952395 |
T |
|
| Q |
101 |
tgaaacgacgactttctccgattctaggtggctatcaattggaatatggtgaaagcagcaacacaagaagtgatcatcaatattctttcnnnnnnntgaa |
200 |
Q |
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| T |
952394 |
tgaaacgacgactttctccgattctaggtggctatcaattggaatatggtgaaagcagcaacacaagaagtgatgatcaatattctttcaaaaaaatgaa |
952295 |
T |
|
| Q |
201 |
aataaggaggtgcaagtcaatatgaaaattaaataaaagttgttttatgttttcagtttatatatcaannnnnnnaacctttatctctacatatttgttt |
300 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
952294 |
aataaggaggtgcaggtcaatatgaaaat----taaaagttgttttatgttttcagtttatatatcaatttttttaagctttatctctacatatttgttt |
952199 |
T |
|
| Q |
301 |
ccttgacttcctaaaatttctttttaagatttatgtatcaagatttgtttcgattaaaattgtttattactgctctagctttattgtgttcgtgattctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
952198 |
ccttgacttcctaaaatttctttttaagatttatgtatcaagatttgtttcgattaaaattgtttattactgctctagctttattgtgttcgtgattctc |
952099 |
T |
|
| Q |
401 |
gtatgtcatttgccacannnnnnncaatgtagtttaatttggattgcaatggtttgtctgttttccccgcagttgaaccttgtacgaccaaaaataaaat |
500 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
952098 |
gtatgccatttgccacatttttttcaatgtagtttaatttggattgcaatggtttgtctgttttccccgcagttgaaccttgtacgaccaataataaaat |
951999 |
T |
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| Q |
501 |
ctcaaaggatagattgagtgttggacaaatcatgtacaatttagcatgatgatg |
554 |
Q |
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| T |
951998 |
ctcaaaggatagattgagtgttggacaaatcatgtacaatttagcatgatgatg |
951945 |
T |
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