View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_11 (Length: 416)
Name: NF0663_low_11
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_11 |
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| [»] chr4 (6 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 30 - 416
Target Start/End: Complemental strand, 4600039 - 4599655
Alignment:
| Q |
30 |
taaaaattagtaatagataacnnnnnnngttatgattgttcaaaaatttacttatcttcaattaatgggagcaggattctcaaaacggtgtaataggcat |
129 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4600039 |
taaaaattagtaatagataactttttttgttatgattgttcaaaaatttacttatcttcaattaatgggagcaggattctcaaaacggtgtaataggcat |
4599940 |
T |
|
| Q |
130 |
tggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgatttcatgtttggatggtaatgacta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4599939 |
tggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgatttcatgtttggatggtaatgac-- |
4599842 |
T |
|
| Q |
230 |
tacnnnnnnnaccgtttctacgacaaccatggatcgcgacaaaattgtgacggtaatttaaaatcttctttatctgtttgaaggtttatacagccactga |
329 |
Q |
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||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4599841 |
tactttttttaccttttctacgacaaccatggatcacgacaaaattgtgacggtaatttaaaatcttctttatctgtttgcaggtttatacagccactga |
4599742 |
T |
|
| Q |
330 |
caaccggagagtatccagcaagcatggtgtctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggt |
416 |
Q |
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| T |
4599741 |
caaccggagagtatccagcaaacatggtgtctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggt |
4599655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 108 - 416
Target Start/End: Complemental strand, 4624295 - 4623983
Alignment:
| Q |
108 |
ctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgattt |
207 |
Q |
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| T |
4624295 |
ctcaaaatggtgtaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgctgaagacgcccttgattt |
4624196 |
T |
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| Q |
208 |
catgtttggatggtaatgactatacnnnnnnnaccgtttctacgacaaccatggatcgcgacaaaattgtgacggta--atttaaaatcttctttatctg |
305 |
Q |
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| T |
4624195 |
catgtttggatggtaacaactatactttttg-accgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttaaaatcttctttatctg |
4624097 |
T |
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| Q |
306 |
tttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtgaaagat---ttaccaaagttcactgaagagcaatctaa |
402 |
Q |
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| T |
4624096 |
tttgcaggtttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagctaccaaagttcactgcagagcaatctaa |
4623997 |
T |
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| Q |
403 |
aagtcttattgggt |
416 |
Q |
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||||||||||||| |
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| T |
4623996 |
gagtcttattgggt |
4623983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 414
Target Start/End: Complemental strand, 25038291 - 25038178
Alignment:
| Q |
304 |
tgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtg---aaagatttaccaaagttcactgaagagcaatct |
400 |
Q |
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|||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||| || ||||||||||||||| |||||||||| |
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| T |
25038291 |
tgtttgtaggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagagagcaatct |
25038192 |
T |
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| Q |
401 |
aaaagtcttattgg |
414 |
Q |
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|| | ||||||||| |
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| T |
25038191 |
aagattcttattgg |
25038178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 25017429 - 25017293
Alignment:
| Q |
89 |
aattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagcca |
188 |
Q |
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||||||||| ||||| ||||||||| ||| ||||||||| | |||| ||||||||||||| |||| ||||| || |||||||||| ||||| |
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| T |
25017429 |
aattaatggcagcagtcttctcaaaatggttcaataggcatcagcttaagctctcactggtttctgccgttctcaaatcacacattagatcatcaagctg |
25017330 |
T |
|
| Q |
189 |
ccgaacgcgcccttgatttcatgtttggatggtaatg |
225 |
Q |
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||||||| || ||||||| |||||||||||||||||| |
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| T |
25017329 |
ccgaacgtgctcttgattacatgtttggatggtaatg |
25017293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 402
Target Start/End: Complemental strand, 25017186 - 25017085
Alignment:
| Q |
304 |
tgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtcttt--cgtgaaa-gatttaccaaagttcactgaagagcaatct |
400 |
Q |
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|||||| |||||||| |||||| |||| || |||||||||||| ||||||||||||||| || |||| ||||||||||||||| ||||||||||| |
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| T |
25017186 |
tgtttgcaggtttatgcagccattgaccacaggagagtatccattaagcatggtgtcttttgcgggaaatcgtttaccaaagttcaccaaagagcaatct |
25017087 |
T |
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| Q |
401 |
aa |
402 |
Q |
| |
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|| |
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| T |
25017086 |
aa |
25017085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 25038530 - 25038397
Alignment:
| Q |
89 |
aattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagcca |
188 |
Q |
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||||||||| | |||| ||||||||| ||| ||||||||| ||||| | |||||||||| |||| ||||| ||| | |||||||| ||||| |
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| T |
25038530 |
aattaatggcatcaggcttctcaaaatggttcaataggcatcaccttaaattgtcactggtttttgccgttctcaaatgacacgttagatcatcaagctt |
25038431 |
T |
|
| Q |
189 |
ccgaacgcgcccttgatttcatgtttggatggta |
222 |
Q |
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||||||| || ||||||||||||||||||||||| |
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| T |
25038430 |
ccgaacgtgctcttgatttcatgtttggatggta |
25038397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 416
Target Start/End: Original strand, 18804667 - 18804824
Alignment:
| Q |
259 |
tggatcgcgacaaaattgtgacggtaatttaaaatcttctttatctgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtg |
358 |
Q |
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|||||| ||||| ||||| | | |||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||||||||||| |
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| T |
18804667 |
tggatcacgacataattgcggcagtaatttaaaatcttctttatctgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtg |
18804766 |
T |
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| Q |
359 |
tctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggt |
416 |
Q |
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||| || || ||||||||||||||| ||||||||| | | ||||||||||||| |
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| T |
18804767 |
tctaatttggaaacattaccaaagttcactaaagagcaatatgagagtcttattgggt |
18804824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 18804346 - 18804486
Alignment:
| Q |
91 |
ttaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccacc |
190 |
Q |
| |
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||||||| |||||| ||||||||| ||| |||||||||| |||||||| | ||||||| ||| | ||| |||| |||||||| ||||| || |
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| T |
18804346 |
ttaatggaagcaggcttctcaaaagggtataataggcatcacattaaactgtacctggtttttgccgcaatcagataacccgttagatcatcaagctgcc |
18804445 |
T |
|
| Q |
191 |
gaacgcgcccttgatttcatgtttggatggtaatgactata |
231 |
Q |
| |
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||||| ||||||||||| || ||||||||||||||||||| |
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| T |
18804446 |
gaacgtgcccttgatttattgcttggatggtaatgactata |
18804486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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