View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_12 (Length: 415)
Name: NF0663_low_12
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 41 - 402
Target Start/End: Complemental strand, 34646298 - 34645937
Alignment:
| Q |
41 |
gtttttccatgtcgtttcagatattcaataagaacacccatttctcgatattaatgtagtggtgatgagattatttctcccatctttgatacttaaagct |
140 |
Q |
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| T |
34646298 |
gtttttccatgtcgtttcagatattcaataagaacatccatttctcgatattaatgtagtggtgatgagattatttctcccatctttgatacttaaagct |
34646199 |
T |
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| Q |
141 |
tccaggtgaatacgatacccttattctaaaagttgtctcgaacttgaaatagtgaaagtagtaaatatttaaagaaaattgatgtcttcgacatttcaag |
240 |
Q |
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| T |
34646198 |
ttcaggtgaatatgatacccttattctaaaagttgtctcgaacttgaaatagtgaaagtagtaaatatttaaagaaaattgatgtcttccacattttaag |
34646099 |
T |
|
| Q |
241 |
agaattaagatattgcctttgccttttattggaatcttggaatcgtcgacaaatgagacaattccacttaatgattcatcaagtttcacgaacatgctcc |
340 |
Q |
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| T |
34646098 |
agaattaagatattgcccttgccttttattggaatcttggaatcgtcgacaaatgagacaattccacttaatgattcatcaagttttacgaacatgctcc |
34645999 |
T |
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| Q |
341 |
tatttccacacatatggttgcttgcaccagtgtcaatataccatgaattttgtaaggttcct |
402 |
Q |
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| T |
34645998 |
tatttccacacatatggttgcttgcacgagtgtcaatataccatgaattttgtaaggttcct |
34645937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 376
Target Start/End: Original strand, 4890500 - 4890660
Alignment:
| Q |
216 |
aaattgatgtcttcgacatttcaagagaattaagatattgcctttgccttttattggaatcttggaatcgtcgacaaatgagacaattccacttaatgat |
315 |
Q |
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| T |
4890500 |
aaattgatgtcttccatctttcaagcgaattaagatattacatttgtttttcactggaatcttggaatcatcgccaaatgagacattgccacacactgat |
4890599 |
T |
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| Q |
316 |
tcatcaagtttcacgaacatgctcctatttccacacatatggttgcttgcaccagtgtcaa |
376 |
Q |
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| T |
4890600 |
tcatcaagctctacaaacatgctccttttcccacacatatgattgcttgcaccagtgtcaa |
4890660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 40846394 - 40846297
Alignment:
| Q |
263 |
cttttattggaatcttggaatcgtcgacaaatgagacaattccacttaatgattcatcaagtttcacgaacatgctcctatttccacacatatggttg |
360 |
Q |
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|||| ||| ||| ||||| ||| ||| ||||||||||| | ||||||| |||||||||||| | ||| ||||| ||||| ||| |||||||||||||| |
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| T |
40846394 |
ctttcattagaaccttgggatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttg |
40846297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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