View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_13 (Length: 413)
Name: NF0663_low_13
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 29 - 405
Target Start/End: Complemental strand, 24834479 - 24834102
Alignment:
| Q |
29 |
agttgtcacccatctcaatgacttcgatatcaaccaatccttccataaaggagcttgttgtaacagcttgaatgtctctatagaa-ggtaattaagactc |
127 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24834479 |
agttgtcacccatctcaatgacttcgaaatcaaccaatccttccataaaggagcttgttgtaacagcttgaatgtctctatagaaaggtaattaagactc |
24834380 |
T |
|
| Q |
128 |
cgatgtaagatctccaactccttcaacaccctcttgcaaaccaccacctaaagtgccaacatggactcctctactaccaagatcttggcagttgcaacca |
227 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
24834379 |
cgatgtaagatctccaactccttcaacacgctcttgcaaaccaccacctaaagtgccaacatggactcctctaccaccaagatcttggcagtcgcaacca |
24834280 |
T |
|
| Q |
228 |
ctattatgaatgacatttctgcaccagctttgttgacgtatcaacgcctcttttctccatcagcttgcttttattctgcatctactcatcccttccaaac |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24834279 |
ctattatgaatgacatttctgcaccagctttgttgacgtatcaacgcctcttttctccatcagcttgcttttattttgcatctactcatcccttccaaac |
24834180 |
T |
|
| Q |
328 |
tgtgctccattaaccttgaactttctcccatcaaaccacacatcccccatcctacttccaacctcctccacattattc |
405 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24834179 |
cgtgctctattaaccttgaactttatcccatcaaaccacacatcccccatcctacttccaacctcctccacattattc |
24834102 |
T |
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