View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_16 (Length: 384)
Name: NF0663_low_16
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_16 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 243 - 384
Target Start/End: Original strand, 42334779 - 42334919
Alignment:
| Q |
243 |
catatgtttcttgacgtgcaagattcttgaggtccaactttttaaatgataattattctaataatatcatattcatggtctttcaaataaaatnnnnnnn |
342 |
Q |
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| T |
42334779 |
catatgtttcttgacgtgcaagattcttgaggtccaactttttaaatgataattattctaataatatcatattcatggtctttcaaataaaat-aaaaaa |
42334877 |
T |
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| Q |
343 |
ttaggcattagaataatgacgacaaccttgttagaaaagaaa |
384 |
Q |
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| T |
42334878 |
ttaggcattagaataatgacgacaaccttgttagaaaagaaa |
42334919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 7607673 - 7607602
Alignment:
| Q |
175 |
aaatcatggttgggtctaacacaacttcacaaaatcgg--tttgaggtgaaaattgtctccaattataaaca |
244 |
Q |
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| T |
7607673 |
aaatcatggttgggcctaacacaactccacaaaaccggcttgtgaggtgaagattgtctccacttataaaca |
7607602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 6906682 - 6906624
Alignment:
| Q |
247 |
tgtttcttgacgtgcaagattcttgaggtccaactttttaaatgataattattctaata |
305 |
Q |
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| T |
6906682 |
tgtttcttgaggtgcaagatccttgaggtccaagtttcataatgataattattctaata |
6906624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 24013553 - 24013611
Alignment:
| Q |
247 |
tgtttcttgacgtgcaagattcttgaggtccaactttttaaatgataattattctaata |
305 |
Q |
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| T |
24013553 |
tgtttcttgaggtgcaagatccttgaagtccaagtttcttaatgataattattctaata |
24013611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 26028971 - 26029003
Alignment:
| Q |
180 |
atggttgggtctaacacaacttcacaaaatcgg |
212 |
Q |
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| T |
26028971 |
atggttgggtctaacacaacctcacaaaatcgg |
26029003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 48243435 - 48243475
Alignment:
| Q |
168 |
atctcaaaaatcatggttgggtctaacacaacttcacaaaa |
208 |
Q |
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| T |
48243435 |
atcttaaaaatcatggttgggtctaacacaaccccacaaaa |
48243475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 9398097 - 9398131
Alignment:
| Q |
181 |
tggttgggtctaacacaacttcacaaaatcggttt |
215 |
Q |
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| T |
9398097 |
tggttggatctaacacaacttcacaaaatcggttt |
9398131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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