View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_17 (Length: 368)
Name: NF0663_low_17
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 359
Target Start/End: Complemental strand, 31110009 - 31109674
Alignment:
| Q |
30 |
tgtaatttgcaatacatatagatatagatatagaacttgagttcaatttacttggtagtcacggaccaatattggttggttctccaagaatctaatgttc |
129 |
Q |
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| T |
31110009 |
tgtaatttgcaatacatatagatatagatatagaagttgagttcaatttacttggtagtcacggaccaatattggttggttctccaagaatctaatgttc |
31109910 |
T |
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| Q |
130 |
tgc------ttcnnnnnnnnaactgaaactgttatttcatcgcttgttaagtaccatgctgatatgccgatatgcaagcacaagttgatacaagctgtaa |
223 |
Q |
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| T |
31109909 |
tgctttttttttttttttttaactgaaactgttatttcatcgcttgttaagtaccatgctgatatgccgatatgcaagcacaagttgatacaagctgtga |
31109810 |
T |
|
| Q |
224 |
attgtaatttgtactacnnnnnnnnnnnnnnnnnnnnnnnaaagttgagttcaatttactgggtagtcatggaccattcagtcatatgaaaaatcgatga |
323 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31109809 |
attgtaatttgtactacatatagatatagatatagatataaaagttgagttcaatttactgggtagtcatggaccattcagtcatatgaaaaatcgatga |
31109710 |
T |
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| Q |
324 |
catactctgttgttacagttgatgataagttctttt |
359 |
Q |
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| T |
31109709 |
catactctgttgttacagttgatgataagttctttt |
31109674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 31080169 - 31080096
Alignment:
| Q |
57 |
atatagaacttgagttcaatttacttggtagtcacggaccaatattggttggttctccaagaatctaatgttctgctt |
134 |
Q |
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|||||||| |||||||||||||||||||| |||| |||||| || |||||||||||||||||||||||||||||| |
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| T |
31080169 |
atatagaagttgagttcaatttacttggtggtcatggaccagta----ttggttctccaagaatctaatgttctgctt |
31080096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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