View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0663_low_19 (Length: 364)

Name: NF0663_low_19
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0663_low_19
NF0663_low_19
[»] scaffold0428 (3 HSPs)
scaffold0428 (29-341)||(11592-11905)
scaffold0428 (33-341)||(4118-4427)
scaffold0428 (236-282)||(12849-12895)
[»] chr6 (9 HSPs)
chr6 (29-341)||(33282347-33282660)
chr6 (33-327)||(33260069-33260360)
chr6 (131-267)||(33385824-33385960)
chr6 (149-268)||(33416581-33416700)
chr6 (142-282)||(33397055-33397198)
chr6 (150-231)||(31564219-31564299)
chr6 (301-346)||(33260024-33260069)
chr6 (236-282)||(33281357-33281403)
chr6 (236-282)||(33408005-33408051)
[»] chr2 (1 HSPs)
chr2 (144-266)||(17443261-17443383)


Alignment Details
Target: scaffold0428 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 11592 - 11905
Alignment:
Q  29 agaatgatattacacataatagctagcttatttagcttattacacataacggatagaggannnnnnnnnn-cctatatggagatggaggannnnnnnnnn 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||              
T  11592 agaatgatattacacataatagctagcttatttagcttattacacataacggatagaggatttttttttttcctatatggagatggaggatttttttctt 11691  T
Q  128 nnngttatgaagggagttttatttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaa 227  Q
       |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  |||||||||||||||||||||| |||||| | |||    
T  11692 tttgttatgaagggagttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaa 11791  T
Q  228 gaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnngaagtgtatctaactctaatagacaaactggcatt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  11792 gaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattaaaaaaaaagaagtgtatctaactctaatagacaaactggcatt 11891  T
Q  328 acaacttttgatga 341  Q
    |||||||| |||||    
T  11892 acaactttagatga 11905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 33 - 341
Target Start/End: Complemental strand, 4427 - 4118
Alignment:
Q  33 tgatattacacataatagctagcttatttagcttattacacataacggatagaggannnnnnnnnncctatatggagatggaggannnnnnnnnnnnn-g 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||              |    
T  4427 tgatattacacataatagctagcttatttagcttattacacataacggatagaggattttttttttcctatatggagatggaggattttttttctttttg 4328  T
Q  132 ttatgaagggagttttatttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaag 231  Q
    ||||||||||||||| ||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||| | |||||||    
T  4327 ttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaacgatcaagttcccactcctgaaagtcctgcacctgaagaag 4228  T
Q  232 tgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnngaagtgtatctaactctaatagacaaactggcattacaa 331  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  4227 tgccagaacaaacaccagtagcatcacaagttgaagaagttgcaattgcattaaaaaaaaagaagtgtatctaactctaatagacaaactggcattacaa 4128  T
Q  332 cttttgatga 341  Q
    |||| |||||    
T  4127 ctttagatga 4118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 12849 - 12895
Alignment:
Q  236 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 282  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  12849 agaacaaacacctgtcgcagcacaggttgaagaggttgcaattgcat 12895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 341
Target Start/End: Complemental strand, 33282660 - 33282347
Alignment:
Q  29 agaatgatattacacataatagctagcttatttagcttattacacataacggatagaggannnnnnnnnn-cctatatggagatggaggannnnnnnnnn 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||              
T  33282660 agaatgatattacacataatagctagcttatttagcttattacacataacggatagaggatttttttttttcctatatggagatggaggatttttttctt 33282561  T
Q  128 nnngttatgaagggagttttatttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaa 227  Q
       |||||||||||||||| ||||||| ||||||||| ||| ||||||||||| |||||||||  |||||||||||||||||||||| |||||| | |||    
T  33282560 tttgttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaa 33282461  T
Q  228 gaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnngaagtgtatctaactctaatagacaaactggcatt 327  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  33282460 gaagtgccagaacaaacaccagtagcaacacaagttgaagaagttgcaattgcattaaaaaaaaagaagtgtatctaactctaatagacaaactggcatt 33282361  T
Q  328 acaacttttgatga 341  Q
    |||||||| |||||    
T  33282360 acaactttagatga 33282347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 327
Target Start/End: Complemental strand, 33260360 - 33260069
Alignment:
Q  33 tgatattacacataatagctagcttatttagcttattacacataacggatagaggannnnnnnnnncctatatggagatggaggannnnnnnnnnnnn-g 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||              |    
T  33260360 tgatattacacataatagctagcttatttagcttattacacataacggatagaggattttttttt-cctatatggagatggaggattttttttctttttg 33260262  T
Q  132 ttatgaagggagttttatttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaag 231  Q
    ||||||||||||||| ||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33260261 ttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaag 33260162  T
Q  232 tgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnngaagtgtatctaactctaatagacaaactggcatt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| |||||||||||||||    
T  33260161 tgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattaaaaaaa---aagtgtatctaactctaacagacaaactggcatt 33260069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 33385960 - 33385824
Alignment:
Q  131 gttatgaagggagttttatttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaa 230  Q
    |||||||||||||||||||||||||||||||| | ||| || | ||||||  ||||||||  || ||||||||||||||||||| ||| |||| ||||||    
T  33385960 gttatgaagggagttttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagttccctctcctgaaagtcctccaactgaagaa 33385861  T
Q  231 gtgccagaacaaacaccagtagcagcacaagttgaag 267  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33385860 gtgccagaacaaacaccagtagcagtacaagttgaag 33385824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 33416700 - 33416581
Alignment:
Q  149 tttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaagtgccagaacaaacacca 248  Q
    |||||||| ||||||| ||||  ||||| |||  ||||||||| |||||||||||||||||||||| ||||| || ||||| |||| ||||||||||||     
T  33416700 tttaacttcgaatcctctatccgcagatttaactgaagaaaacaatcaagttccctctcctgaaagtcctgccactgaagaggtgcaagaacaaacacct 33416601  T
Q  249 gtagcagcacaagttgaaga 268  Q
    ||| ||||||||||||||||    
T  33416600 gtatcagcacaagttgaaga 33416581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 33397198 - 33397055
Alignment:
Q  142 agttttatttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaagtgc---caga 238  Q
    |||||| |||||||||| |||||||||  |||||||||| ||||||||  || |||||||||||||||||||| ||||| || ||||||||||    |||    
T  33397198 agttttctttaactttggatcctttattaacagatgtaacagaagaaactgaacaagttccctctcctgaaagtcctgccactgaagaagtgcaagaaga 33397099  T
Q  239 acaaacaccagtagcagcacaagttgaagaagttgcaattgcat 282  Q
    ||||| ||| ||  | | |||||||||||| |||||||||||||    
T  33397098 acaaatacctgtcaccgtacaagttgaagaggttgcaattgcat 33397055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 31564219 - 31564299
Alignment:
Q  150 ttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaag 231  Q
    ||||||||||||| | ||| ||||||||||| ||||||||||||| ||| |||||||||||| || ||||| || |||||||    
T  31564219 ttaactttgaatcatgtat-gacagatgtaacagaagaaaacgattaaggtccctctcctgagagtcctgccactgaagaag 31564299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 33260069 - 33260024
Alignment:
Q  301 tctaactctaatagacaaactggcattacaacttttgatgatgtcc 346  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  33260069 tctaactctaacagacaaactggcattacaactttagatgaagtcc 33260024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 33281403 - 33281357
Alignment:
Q  236 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 282  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  33281403 agaacaaacacctgtcgcagcacaggttgaagaggttgcaattgcat 33281357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 33408051 - 33408005
Alignment:
Q  236 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 282  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  33408051 agaacaaacacctgtcgcagcacatgttgaagaggttgcaattgcat 33408005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 17443261 - 17443383
Alignment:
Q  144 ttttatttaactttgaatcctttatcgacagatgtaaaagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaagtgccagaacaaa 243  Q
    ||||||||||||||||||||| |||  |||||||||| |||||||||| || |||||| |||||||||||| ||||||||| ||||||||||||||||||    
T  17443261 ttttatttaactttgaatcctctatgaacagatgtaacagaagaaaacaatgaagttctctctcctgaaagtcctgcaaccaaagaagtgccagaacaaa 17443360  T
Q  244 caccagtagcagcacaagttgaa 266  Q
    |||||| ||| ||||||||||||    
T  17443361 caccagcagcggcacaagttgaa 17443383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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