View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_20 (Length: 341)
Name: NF0663_low_20
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 30 - 331
Target Start/End: Complemental strand, 14513859 - 14513558
Alignment:
| Q |
30 |
ctttccacttccattacttccaagttgcaattctgaaacacaaggcattgtttcatttttgtcatcaactccttgatcatagagaaaccctttgaataca |
129 |
Q |
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| T |
14513859 |
ctttccacttccattacttccaagttgcaattctgaaacacaaggcattgtttcatttttgtcatcaactccttgatcatagagaaaccctttaaataca |
14513760 |
T |
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| Q |
130 |
tggccactaatattcacagtggccaagtaagcaagttcatcttccccattgccaatagcagatactctatggcacttgaaaacagcaggcgtgcgaacat |
229 |
Q |
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| T |
14513759 |
tggccactaatattcacagtggccaagtaagcaagttcatcttcaccattgccaatagcagaaactctatggcacttgaaaacagcaggcgcgcgaacat |
14513660 |
T |
|
| Q |
230 |
agcgcggcaaagtctgcttgaaaccaggatctgcaattcaaaaacaaacatgagaacacacgatgtttaatcagagttcaaccaattgtgtctacctctc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14513659 |
agcgcggcaaagtctgcttgaaaccaggatctgcaattcagaaacaaacatgagaacacacgatgtttaatcagagttcaaccaattgtgtctacctctc |
14513560 |
T |
|
| Q |
330 |
tg |
331 |
Q |
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|| |
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| T |
14513559 |
tg |
14513558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 4201992 - 4202173
Alignment:
| Q |
31 |
tttccacttccattacttccaagttgcaattctgaaacacaaggcattgtttcatttttgtcatcaactccttgatcatagagaaaccctttgaatacat |
130 |
Q |
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|||||||| | |||| |||| | ||| | |||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||||| |||| |
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| T |
4201992 |
tttccactacaattatttcccaattgaagttctgaaacacaaggcattgg---atttttcccatcaacaccatgatcatagagaaaccctttgaaaacat |
4202088 |
T |
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| Q |
131 |
ggccactaatattcacagtggccaagtaagcaagttcatcttccccattgccaatagcagatactctatggcacttgaaaacagc |
215 |
Q |
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| T |
4202089 |
ggccactaatatgaactgtggccaagtaagcaaattcatcttcaccattgccaatagcagttactctatggcacctgaatacagc |
4202173 |
T |
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