View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_24 (Length: 303)
Name: NF0663_low_24
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 12202742 - 12202836
Alignment:
| Q |
152 |
tacgcgctcctacttcctttctctcataatctcacagctgcctctctccttcccgtcgctgccgccgcccctctccctccatccactggcgccgac |
247 |
Q |
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| T |
12202742 |
tacgcgctcctacttcctttctctcataatctcacagctgcctctctccctcccgt-gccgccaccgcccctctccctccatccaccggcgccgac |
12202836 |
T |
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Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 12447170 - 12447264
Alignment:
| Q |
152 |
tacgcgctcctacttcctttctctcataatctcacagctgcctctctccttcccgtcgctgccgccgcccctctccctccatccactggcgccgac |
247 |
Q |
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| T |
12447170 |
tacgcgctcctacttcctttctctcataatctcacagctgcctctctccctcccgt-gccgccaccgcccctctccctccatccaccggcgccgac |
12447264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 35029808 - 35029743
Alignment:
| Q |
133 |
atttaatgaaaataaaggctacgcgctcctacttcctttctctcataatctcacagctgcctctctc |
199 |
Q |
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| T |
35029808 |
atttaataaaaataaagcatacgcactcttacttcctt-ctctcataatctaacagttgcctctctc |
35029743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 35906526 - 35906465
Alignment:
| Q |
173 |
tctcataatctcacagctgcctctctccttcccgtcgctgccgccgcccctctccctccatc |
234 |
Q |
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|||||||||||||||||||| ||||| | |||| ||| | |||||| |||||||||||||| |
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| T |
35906526 |
tctcataatctcacagctgcatctcttcctcccaccgccgtcgccgcacctctccctccatc |
35906465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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