View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0663_low_25 (Length: 288)

Name: NF0663_low_25
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0663_low_25
NF0663_low_25
[»] scaffold0335 (1 HSPs)
scaffold0335 (61-234)||(7642-7815)
[»] chr4 (7 HSPs)
chr4 (63-234)||(27848667-27848839)
chr4 (61-209)||(3863292-3863440)
chr4 (61-209)||(3872049-3872197)
chr4 (124-209)||(13898862-13898946)
chr4 (155-209)||(11201407-11201462)
chr4 (155-209)||(11208138-11208193)
chr4 (155-209)||(35461543-35461598)
[»] chr6 (11 HSPs)
chr6 (61-209)||(22347387-22347534)
chr6 (61-209)||(17026401-17026550)
chr6 (127-209)||(29266313-29266394)
chr6 (127-232)||(22910313-22910417)
chr6 (127-232)||(22888770-22888874)
chr6 (160-209)||(8759448-8759498)
chr6 (160-209)||(8767209-8767259)
chr6 (160-209)||(14593633-14593683)
chr6 (160-209)||(14725336-14725386)
chr6 (85-209)||(14995242-14995366)
chr6 (160-209)||(7430594-7430644)
[»] scaffold0562 (1 HSPs)
scaffold0562 (61-209)||(2869-3016)
[»] scaffold0042 (1 HSPs)
scaffold0042 (61-209)||(53734-53881)
[»] scaffold1913 (1 HSPs)
scaffold1913 (116-209)||(786-878)
[»] scaffold0011 (2 HSPs)
scaffold0011 (116-209)||(153243-153335)
scaffold0011 (160-209)||(173616-173666)
[»] scaffold0322 (1 HSPs)
scaffold0322 (61-209)||(20093-20242)
[»] scaffold0160 (1 HSPs)
scaffold0160 (111-209)||(15802-15898)
[»] chr8 (9 HSPs)
chr8 (78-209)||(19989827-19989959)
chr8 (73-209)||(21282912-21283050)
chr8 (160-209)||(3698675-3698725)
chr8 (160-209)||(10607863-10607913)
chr8 (160-209)||(20011255-20011305)
chr8 (160-209)||(21299314-21299364)
chr8 (160-209)||(25623802-25623852)
chr8 (160-209)||(23826212-23826262)
chr8 (160-209)||(44432933-44432983)
[»] chr7 (10 HSPs)
chr7 (133-209)||(1613526-1613601)
chr7 (127-234)||(16667574-16667680)
chr7 (127-234)||(17641944-17642050)
chr7 (126-230)||(14039580-14039683)
chr7 (126-230)||(14349610-14349713)
chr7 (160-209)||(27565900-27565950)
chr7 (160-209)||(38829132-38829182)
chr7 (61-209)||(41781049-41781196)
chr7 (61-209)||(36305248-36305398)
chr7 (160-209)||(19617367-19617417)
[»] scaffold0535 (1 HSPs)
scaffold0535 (116-209)||(5212-5304)
[»] chr1 (5 HSPs)
chr1 (140-209)||(24960845-24960913)
chr1 (160-209)||(2332064-2332114)
chr1 (160-209)||(5381614-5381664)
chr1 (160-209)||(21543128-21543178)
chr1 (160-209)||(42094945-42094995)
[»] scaffold0575 (1 HSPs)
scaffold0575 (127-209)||(9439-9520)
[»] scaffold0106 (3 HSPs)
scaffold0106 (133-209)||(37054-37130)
scaffold0106 (61-209)||(29387-29536)
scaffold0106 (160-209)||(39473-39523)
[»] scaffold0149 (1 HSPs)
scaffold0149 (127-234)||(27251-27357)
[»] scaffold0057 (1 HSPs)
scaffold0057 (61-209)||(1210-1359)
[»] chr5 (6 HSPs)
chr5 (61-209)||(26754368-26754517)
chr5 (160-209)||(21495852-21495902)
chr5 (160-209)||(22757819-22757869)
chr5 (160-209)||(43242512-43242562)
chr5 (160-209)||(1856483-1856533)
chr5 (160-209)||(21674453-21674503)
[»] scaffold0253 (2 HSPs)
scaffold0253 (127-232)||(6211-6315)
scaffold0253 (127-232)||(15636-15740)
[»] chr3 (11 HSPs)
chr3 (61-207)||(31689786-31689933)
chr3 (61-209)||(31944293-31944442)
chr3 (160-209)||(14288181-14288231)
chr3 (160-209)||(12270484-12270534)
chr3 (160-209)||(14647034-14647084)
chr3 (160-209)||(35985668-35985718)
chr3 (160-209)||(8579246-8579296)
chr3 (160-209)||(10988813-10988863)
chr3 (160-209)||(14085603-14085653)
chr3 (160-209)||(14091004-14091054)
chr3 (160-209)||(49400603-49400653)
[»] scaffold1765 (1 HSPs)
scaffold1765 (140-231)||(445-535)
[»] scaffold1340 (1 HSPs)
scaffold1340 (160-232)||(375-446)
[»] scaffold0371 (1 HSPs)
scaffold0371 (127-234)||(6118-6224)
[»] scaffold0054 (1 HSPs)
scaffold0054 (127-232)||(10166-10270)
[»] scaffold0026 (2 HSPs)
scaffold0026 (133-209)||(67167-67243)
scaffold0026 (160-209)||(36548-36598)
[»] chr2 (6 HSPs)
chr2 (61-201)||(38929036-38929177)
chr2 (127-209)||(23149570-23149652)
chr2 (127-209)||(23561360-23561442)
chr2 (160-209)||(22795801-22795851)
chr2 (160-209)||(6743301-6743351)
chr2 (160-209)||(43694472-43694522)
[»] scaffold0395 (1 HSPs)
scaffold0395 (133-209)||(1366-1441)
[»] scaffold0222 (1 HSPs)
scaffold0222 (158-209)||(4180-4232)
[»] scaffold0192 (1 HSPs)
scaffold0192 (158-209)||(21825-21877)
[»] scaffold0139 (1 HSPs)
scaffold0139 (160-209)||(2063-2113)
[»] scaffold0028 (3 HSPs)
scaffold0028 (160-209)||(91741-91791)
scaffold0028 (160-209)||(46034-46084)
scaffold0028 (160-209)||(51438-51488)
[»] scaffold0610 (1 HSPs)
scaffold0610 (173-209)||(6517-6553)
[»] scaffold0203 (1 HSPs)
scaffold0203 (173-209)||(16418-16454)
[»] scaffold0266 (1 HSPs)
scaffold0266 (160-209)||(23981-24031)
[»] scaffold0249 (1 HSPs)
scaffold0249 (160-209)||(5921-5971)
[»] scaffold0201 (1 HSPs)
scaffold0201 (160-209)||(27283-27333)
[»] scaffold0076 (2 HSPs)
scaffold0076 (160-209)||(29200-29250)
scaffold0076 (160-209)||(34601-34651)
[»] scaffold0046 (1 HSPs)
scaffold0046 (160-209)||(71543-71593)
[»] scaffold0008 (1 HSPs)
scaffold0008 (160-209)||(124070-124120)
[»] scaffold0003 (2 HSPs)
scaffold0003 (160-209)||(80308-80358)
scaffold0003 (160-209)||(100030-100080)
[»] scaffold0298 (1 HSPs)
scaffold0298 (182-234)||(625-677)
[»] scaffold0178 (1 HSPs)
scaffold0178 (160-211)||(26418-26470)


Alignment Details
Target: scaffold0335 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 7815 - 7642
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatctcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatcaa 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || || ||| |||||||| ||||||||||||||||||| |    
T  7815 atctaagtacaattaacatggtttctatacattttcaattcaatctcaataatcaaaacctattttccc-atttcaccaaaaccctcttgttagaatc-a 7718  T
Q  161 aaatcagaattcaatccatactattgagagtaaacctcacccttaccttgatt--gacgaatcaaagctctacaaa 234  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||  ||||||  |||||||||||||    
T  7717 aaatcagaattcaatctatactattgagagtaaacctcacccttaccttaattcagacgaacaaaagctctacaaa 7642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 234
Target Start/End: Complemental strand, 27848839 - 27848667
Alignment:
Q  63 ctaagtacagttaacatggtttctatacattttcaattcaatctc-agtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatcaaa 161  Q
    ||||||||| |||||||||||||||||||||||||||||||   | |  ||||||||| || |||||||||| |||| ||||| |||| |||||||||||    
T  27848839 ctaagtacaattaacatggtttctatacattttcaattcaaaaaccacaaatcaaaacctatttccccaatt-caccaaaaccttcttattagaatcaaa 27848741  T
Q  162 aatcagaattcaatccatactattgagagtaaacctcacccttaccttga-ttgacgaatcaaagctctacaaa 234  Q
    | |||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  27848740 attcagaatttaatctatactattgagagtaaacctcacccttaccttaatttgacgaatcaaagctctacaaa 27848667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 3863440 - 3863292
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaat-ctcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatca 159  Q
    ||||||||| | ||||||||||||||||||||||||||||||||  ||| | |||||||| || |||||| | |||||| |||||||||||||||||||     
T  3863440 atctaagtataattaacatggtttctatacattttcaattcaataatcaatgatcaaaacctatttcccccaattcaccaaaaccctcttgttagaatc- 3863342  T
Q  160 aaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||| ||||||| |||| | ||||||||||||||||||||||||||||||    
T  3863341 aaaaccagaatttaatctacactattgagagtaaacctcacccttacctt 3863292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 3872197 - 3872049
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaat-ctcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatca 159  Q
    ||||||||| | ||||||||||||||||||||||||||||||||  ||| | |||||||| || |||||| | |||||| |||||||||||||||||||     
T  3872197 atctaagtataattaacatggtttctatacattttcaattcaataatcaatgatcaaaacctatttcccccaattcaccaaaaccctcttgttagaatc- 3872099  T
Q  160 aaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||| ||||||| |||| | ||||||||||||||||||||||||||||||    
T  3872098 aaaaccagaatttaatctacactattgagagtaaacctcacccttacctt 3872049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 13898946 - 13898862
Alignment:
Q  124 ttccccaatttcacctaaaccctctt-gttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||| |||| |||||||||| |||||||||| || ||||||||||||| |||||||||| |||||||||||| ||||||||    
T  13898946 ttccccaatt-caccaaaaccctctttgttagaatcagaa-tcagaattcaatctatactattgaaagtaaacctcactcttacctt 13898862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 11201462 - 11201407
Alignment:
Q  155 aatcaaaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  11201462 aatccaaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 11201407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 11208193 - 11208138
Alignment:
Q  155 aatcaaaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  11208193 aatccaaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 11208138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 35461598 - 35461543
Alignment:
Q  155 aatcaaaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||||||| ||||| |||||||||  ||||||| |||||||||||||    
T  35461598 aatcaaaaatcagaattacaatctatactattgtaagtaaacttcacccttacctt 35461543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 22347387 - 22347534
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc-tcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatca 159  Q
    ||||||||||| |||||||||||||||||||||||||||||||   ||| |||||||||| || |||||||||| |||| |||||||||||||||||| |    
T  22347387 atctaagtacaattaacatggtttctatacattttcaattcaagaatcaataatcaaaacctatttccccaatt-caccaaaaccctcttgttagaatga 22347485  T
Q  160 aaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    ||| | ||||||||||| ||||||||||||||||||||||||||||||||    
T  22347486 aaatt-agaattcaatctatactattgagagtaaacctcacccttacctt 22347534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 17026550 - 17026401
Alignment:
Q  61 atctaagtacagttaacatggtttctatacatttt-caattcaatc-tcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatc 158  Q
    ||||||||||| | | ||||||||||||||||||| ||||| ||   ||| |||||||| | || || ||| |||||||| ||||||| |||||||||||    
T  17026550 atctaagtacaataatcatggtttctatacatttttcaatttaagaatcaataatcaaacc-tattttccctatttcaccaaaacccttttgttagaatc 17026452  T
Q  159 aaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  17026451 aaaaatcagaattcaatctatactattgagagtgaatctcacccttacctt 17026401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 29266313 - 29266394
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||| ||| |||||||| ||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||    
T  29266313 cccaatttaaccaaaaccctcatgttataatcaaaatt-agaattcaatctatactattgagagtaaacctcacccttacctt 29266394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 22910417 - 22910313
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||||||| || || ||| |||||    
T  22910417 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactattgagagtaaacctcacccttaccttaatcgaagaa-caaag 22910320  T
Q  226 ctctaca 232  Q
    |||||||    
T  22910319 ctctaca 22910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 22888874 - 22888770
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| || |||||||||||||||||||||||||||||  |||| ||| |||||    
T  22888874 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatgctattgagagtaaacctcacccttaccttagttgaagaa-caaag 22888777  T
Q  226 ctctaca 232  Q
    |||||||    
T  22888776 ctctaca 22888770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 8759498 - 8759448
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  8759498 aaaatcagaatttcaatctatactattgaaagtaaacctcacccttacctt 8759448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 8767259 - 8767209
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  8767259 aaaatcagaatttcaatctatactattgaaagtaaacctcacccttacctt 8767209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 14593683 - 14593633
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  14593683 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 14593633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 14725336 - 14725386
Alignment:
Q  160 aaaatcagaattcaa-tccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  14725336 aaaatcagaattaaaatccatactattgaaagtaaacctcacccttacctt 14725386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 14995366 - 14995242
Alignment:
Q  85 ctatacattttcaattcaatctcagtaatcaaaacgtaatt--ccccaatttcacctaaaccctcttgttagaatcaaaaatcagaatt-caatccatac 181  Q
    |||||||||||| ||||||| ||| ||||||||||  | ||  |||| | |||||| ||||||||||||||| | |||   |||||||| ||||| | ||    
T  14995366 ctatacattttctattcaatttca-taatcaaaacccatttttcccccaattcacccaaaccctcttgttagcaacaat--tcagaatttcaatctacac 14995270  T
Q  182 tattgagagtaaacctcacccttacctt 209  Q
    |||||| |||||||||||||||||||||    
T  14995269 tattgaaagtaaacctcacccttacctt 14995242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 7430594 - 7430644
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||| ||| ||||| |||||||||| |||||||||||||||||||||    
T  7430594 aaaatcaggattacaatctatactattgaaagtaaacctcacccttacctt 7430644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 3016 - 2869
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaat-ctcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatca 159  Q
    ||||||||| | ||||||||||||||||||||||||||||||||  ||| | |||||||| || |||||||| |||||| |||||||||||||||||||     
T  3016 atctaagtataattaacatggtttctatacattttcaattcaataatcaatgatcaaaacctatttccccaa-ttcaccaaaaccctcttgttagaatc- 2919  T
Q  160 aaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||| ||||||| |||| | ||||||||||||||||||||||||||||||    
T  2918 aaaaccagaatttaatctacactattgagagtaaacctcacccttacctt 2869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 53734 - 53881
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaa-tctcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatca 159  Q
    ||||||||||| ||||||||||||||||||||||||| |||||   ||| |||||||||| || |||||||| |||||| |||||||| ||||||||||     
T  53734 atctaagtacaattaacatggtttctatacattttcatttcaaggatcaataatcaaaacctatttccccaa-ttcaccaaaaccctcctgttagaatc- 53831  T
Q  160 aaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||||||  |||||||||||||||  |||||||||||||||    
T  53832 aaaatcagaattcaatatatactattgagagtaggcctcacccttacctt 53881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1913 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1913
Description:

Target: scaffold1913; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 786 - 878
Alignment:
Q  116 aaacgtaattccccaatttcacctaaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||| ||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  786 aaacctaatttcccaaattcaccaaaaccctcttgttagaatcaaaa-tcagaattcaatctatactattgagagtaaacctcacccttacctt 878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 153243 - 153335
Alignment:
Q  116 aaacgtaattccccaatttcacctaaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||| ||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  153243 aaacctaatttcccaaattcaccaaaaccctcttgttagaatcaaaa-tcagaattcaatctatactattgagagtaaacctcacccttacctt 153335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 173666 - 173616
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  173666 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 173616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 20093 - 20242
Alignment:
Q  61 atctaagtacagttaacatggtttctatacatttt-caattcaatc-tcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatc 158  Q
    ||||||||||| | | ||||||||||||||||||| ||||| ||   ||| |||||||| | || || ||| |||||||| ||||||| |||||||||||    
T  20093 atctaagtacaataatcatggtttctatacatttttcaatttaagaatcaataatcaaacc-tattttccctatttcaccaaaacccttttgttagaatc 20191  T
Q  159 aaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  20192 aaaaatcagaattcaatctatactattgagagtgaatctcacccttacctt 20242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 15802 - 15898
Alignment:
Q  111 aatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  15802 aatcaaaacctaatttcccaaattcaccaaaaccctcttgttagaatc-aaaatcagaattcaatctatactattgagagt-aacctcacccttacctt 15898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 19989827 - 19989959
Alignment:
Q  78 atggtttctatacattttcaattcaatc-tcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatcaaaaatcagaattcaatc 176  Q
    ||||||||||||||||||||||||||   ||| |||||||||| || || ||| | |||||| ||||||||||||||||||||||| |   |||||||||    
T  19989827 atggtttctatacattttcaattcaagaatcaataatcaaaacctattttccccaattcaccaaaaccctcttgttagaatcaaaattagaaattcaatc 19989926  T
Q  177 catactattgagagtaaacctcacccttacctt 209  Q
     |||| ||||| |||||||||||||||||||||    
T  19989927 tataccattgaaagtaaacctcacccttacctt 19989959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 21282912 - 21283050
Alignment:
Q  73 ttaacatggtttctatacattttcaattcaatc--tcagtaatcaaaacgtaattccccaatttcacctaaaccctctt-gttagaatcaaaaatcagaa 169  Q
    ||||||||||| ||||||||||||||||||||   |||  |||||||||  | ||  || | |||||  |||||||||| |||||||||| || ||||||    
T  21282912 ttaacatggttcctatacattttcaattcaataaatcaa-aatcaaaacccatttttcccaattcactaaaaccctctttgttagaatcagaa-tcagaa 21283009  T
Q  170 ttcaatccatactattgagagt-aaacctcacccttacctt 209  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  21283010 ttcaatctatactattgaaagtaaaacctcacccttacctt 21283050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 3698675 - 3698725
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  3698675 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 3698725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 10607863 - 10607913
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  10607863 aaaatcagaattataatccatactattgaaagtaaacctcacccttacctt 10607913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 20011305 - 20011255
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  20011305 aaaatcagaattataatctatactattgagagtaaacctcacccttacctt 20011255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 21299364 - 21299314
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  21299364 aaaatcagaattataatccatactattgaaagtaaacctcacccttacctt 21299314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 25623852 - 25623802
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  25623852 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 25623802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 23826212 - 23826262
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  23826212 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 23826262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 44432933 - 44432983
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  44432933 aaaatcagaattacaatctatactattgaaagtaaaactcacccttacctt 44432983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 1613526 - 1613601
Alignment:
Q  133 ttcacctaaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  1613526 ttcaccaaaaccctcttgttagaatcaaaa-tcagaattcaatctatactattgagagtaaacctcacccttacctt 1613601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 16667680 - 16667574
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||||||| ||||||||||||||||||||||| ||||| ||| |||||    
T  16667680 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactatttagagtaaacctcacccttaccttaattgaagaa-caaag 16667583  T
Q  226 ctctacaaa 234  Q
    |||||||||    
T  16667582 ctctacaaa 16667574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 17642050 - 17641944
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||||||| ||||||||||||||||||||||| ||||| ||| |||||    
T  17642050 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactatttagagtaaacctcacccttaccttaattgaagaa-caaag 17641953  T
Q  226 ctctacaaa 234  Q
    |||||||||    
T  17641952 ctctacaaa 17641944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 14039580 - 14039683
Alignment:
Q  126 ccccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaa 224  Q
    |||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||| ||||||||||||| ||||||||||||| ||||| ||| ||||    
T  14039580 ccccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaaatttaatctataccattgagagtaaacatcacccttaccttaattgaagaa-caaa 14039677  T
Q  225 gctcta 230  Q
    ||||||    
T  14039678 gctcta 14039683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 14349610 - 14349713
Alignment:
Q  126 ccccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaa 224  Q
    |||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||| ||||||||||||| ||||||||||||| ||||| ||| ||||    
T  14349610 ccccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaaatttaatctataccattgagagtaaacatcacccttaccttaattgaagaa-caaa 14349707  T
Q  225 gctcta 230  Q
    ||||||    
T  14349708 gctcta 14349713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 27565900 - 27565950
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  27565900 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 27565950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 38829132 - 38829182
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  38829132 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 38829182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 41781196 - 41781049
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc-tcagtaatcaaaacgtaattccccaatttcacctaaaccctcttgttagaatca 159  Q
    ||||||||||| ||||||  |||| ||||||||||| ||||||   |||  | ||||||| || || ||||||| |||| ||||||||||||||||||||    
T  41781196 atctaagtacaattaacagagtttatatacattttccattcaagaatcaaaattcaaaacctattttcccaatt-cacc-aaaccctcttgttagaatca 41781099  T
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||| | ||| ||  |||| ||| |||||||||||||| |||||||||||||    
T  41781098 aaatt-agatttttaatctatattattgagagtaaacttcacccttacctt 41781049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 36305398 - 36305248
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc--tcagtaatcaaaacgtaattccccaatttcacctaaaccctctt-gttagaat 157  Q
    |||||||| || ||||| ||||| ||||||||||||||||||||   |||  |||||||||  | ||  || | |||||| |||||||||| ||||||||    
T  36305398 atctaagttcaattaacttggttcctatacattttcaattcaataattcaa-aatcaaaacccatttttcccaattcaccaaaaccctctttgttagaat 36305300  T
Q  158 caaaaatcagaattcaatccatactattgagagt-aaacctcacccttacctt 209  Q
    |  || ||||||||||||| |||||||||| ||| ||||||||| ||||||||    
T  36305299 cggaa-tcagaattcaatctatactattgaaagtaaaacctcactcttacctt 36305248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 19617367 - 19617417
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  19617367 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 19617417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 5304 - 5212
Alignment:
Q  116 aaacgtaattccccaatttcacctaaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||| ||||| ||||| |||| | ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5304 aaacctaatttcccaaattcatcaaaaccctcttgttagaatcaaaa-tcagaattcaatctatactcttgagagtaaacctcacccttacctt 5212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 24960845 - 24960913
Alignment:
Q  140 aaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  24960845 aaaccctcatgttagaatcaaaa-tcagaattcaatctatactattgagagtaaacctcacccttacctt 24960913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 2332114 - 2332064
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  2332114 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 2332064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 5381614 - 5381664
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  5381614 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 5381664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 21543128 - 21543178
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  21543128 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 21543178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 42094995 - 42094945
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  42094995 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 42094945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0575 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0575
Description:

Target: scaffold0575; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 9439 - 9520
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||| ||| |||||||| |||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||    
T  9439 cccaatttaaccaaaaccctcatgttagaatcaaaa-tcagaattcaatctatactattgatagtaaacttcacccttacctt 9520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 37054 - 37130
Alignment:
Q  133 ttcacctaaaccctctt-gttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||    
T  37054 ttcaccaaaaccctctttgttagaatcaaaa-tcagaattcaatctatactattgaaagtaaacctcacccttacctt 37130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 29387 - 29536
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc--tcagtaatcaaaacgtaattccccaatttcacctaaaccctctt-gttagaat 157  Q
    |||||||| || ||||||||||| |||||||||||||||||||    |||  ||| |||||  | || ||| | |||||| |||||||||| ||||||||    
T  29387 atctaagttcaattaacatggttcctatacattttcaattcaagaaatcaa-aataaaaacccattttccccaattcaccaaaaccctctttgttagaat 29485  T
Q  158 caaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    || || | ||||||||||| |||||||||| |||||| ||||||||||||||    
T  29486 cagaatt-agaattcaatctatactattgaaagtaaatctcacccttacctt 29536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 39473 - 39523
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  39473 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 39523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 27251 - 27357
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||||||| ||||| ||| |||||    
T  27251 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactattgagagtaaacctcacccttaccttaattgaagaa-caaag 27348  T
Q  226 ctctacaaa 234  Q
    |||||||||    
T  27349 ctctacaaa 27357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 1359 - 1210
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc--tcagtaatcaaaacgtaattccccaatttcacctaaaccctctt-gttagaat 157  Q
    |||||||| || ||||||||||| |||||||||||||||| ||    |||  ||||||||| || || | | | |||||| |||||||||| ||||||||    
T  1359 atctaagttcaattaacatggttcctatacattttcaatttaagaaatcaa-aatcaaaacctattttcaccaattcaccaaaaccctctttgttagaat 1261  T
Q  158 caaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    || || ||||||||||||| |||||||||| |||||||||||||||||||||    
T  1260 cagaa-tcagaattcaatctatactattgaaagtaaacctcacccttacctt 1210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 26754368 - 26754517
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc--tcagtaatcaaaacgtaattccccaatttcacctaaaccctctt-gttagaat 157  Q
    |||||||| || ||||||||||| |||||||||||||||||||    |||  |||||||||  | || ||| | |||||| |||||||||| ||| ||||    
T  26754368 atctaagttcaattaacatggttcctatacattttcaattcaagaaatcaa-aatcaaaacccattttccccaattcaccaaaaccctctttgttcgaat 26754466  T
Q  158 caaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    || || ||||||||||||| |||||||||| |||||||||||||||||||||    
T  26754467 cagaa-tcagaattcaatctatactattgaaagtaaacctcacccttacctt 26754517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 21495852 - 21495902
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  21495852 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 21495902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 22757869 - 22757819
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  22757869 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 22757819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 43242562 - 43242512
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  43242562 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 43242512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 1856533 - 1856483
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  1856533 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 1856483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 21674503 - 21674453
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  21674503 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 21674453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 6211 - 6315
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||||||| ||||| ||| |||||    
T  6211 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactattgagagtaaacctcacccttaccttaattgaagaa-caaag 6308  T
Q  226 ctctaca 232  Q
    |||||||    
T  6309 ctctaca 6315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 15636 - 15740
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||||||| ||||| ||| |||||    
T  15636 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactattgagagtaaacctcacccttaccttaattgaagaa-caaag 15733  T
Q  226 ctctaca 232  Q
    |||||||    
T  15734 ctctaca 15740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 31689933 - 31689786
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc--tcagtaatcaaaacgtaattccccaatttcacctaaaccctctt-gttagaat 157  Q
    |||||||| || ||||||||||| |||||||||||||||||||    || | |||||||||  | || ||| | |||||| |||||||||| ||||||||    
T  31689933 atctaagttcaattaacatggttcctatacattttcaattcaagaaatc-gaaatcaaaacccattttccccaattcaccaaaaccctcttcgttagaat 31689835  T
Q  158 caaaaatcagaattcaatccatactattgagagtaaacctcacccttacc 207  Q
    || || |||||||| |||| |||||||||| |||||||||||||||||||    
T  31689834 cagaa-tcagaattaaatctatactattgaaagtaaacctcacccttacc 31689786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 31944293 - 31944442
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc--tcagtaatcaaaacgtaattccccaatttcacctaaaccctctt-gttagaat 157  Q
    |||||||| || ||||||||||| |||||||||||||||||||    || | |||||||||  | || ||| | |||||| |||||||||| ||||||||    
T  31944293 atctaagttcaattaacatggttcctatacattttcaattcaagaaatc-gaaatcaaaacccattttccccaattcaccaaaaccctcttcgttagaat 31944391  T
Q  158 caaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
     | || |||||||| |||| |||||||||| | |||||||||||||||||||    
T  31944392 tagaa-tcagaattaaatctatactattgaaattaaacctcacccttacctt 31944442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 14288231 - 14288181
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  14288231 aaaatcagaattacaatctatactattgagagtaaacctcacccttacctt 14288181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 12270534 - 12270484
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  12270534 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 12270484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 14647084 - 14647034
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  14647084 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 14647034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 35985668 - 35985718
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  35985668 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 35985718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 8579296 - 8579246
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  8579296 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 8579246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 10988863 - 10988813
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  |||| |||||||||| |||||||||||||||||||||    
T  10988863 aaaatcagaattataatctatactattgaaagtaaacctcacccttacctt 10988813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 14085603 - 14085653
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  14085603 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 14085653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 14091004 - 14091054
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  14091004 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 14091054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 49400603 - 49400653
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  49400603 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 49400653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1765 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1765
Description:

Target: scaffold1765; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 445 - 535
Alignment:
Q  140 aaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaagctctac 231  Q
    |||||||| ||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  445 aaaccctcgtgttaaaatcaaaa-tcagaactttaatctatactattgagagtaaacctcacccttaccttaattgaagaa-caaagctctac 535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1340 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1340
Description:

Target: scaffold1340; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 375 - 446
Alignment:
Q  160 aaaatcagaattcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaagctctaca 232  Q
    |||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  375 aaaatcagaatttaatctataccattgagagtaaacctcacccttaccttaattgaagaa-caaagctctaca 446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 6224 - 6118
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| | |||| || |||| |||||||||||||||||||||||||||||||| ||||| ||| |||||    
T  6224 cccaaattaaccaaaaccctcatgttaaaatcaaaatt-agaactttaatctatactattgagagtaaacctcacccttaccttaattgaagaa-caaag 6127  T
Q  226 ctctacaaa 234  Q
    |||||||||    
T  6126 ctctacaaa 6118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 10270 - 10166
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttaccttgattgacgaatcaaag 225  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||||||| || || ||| |||||    
T  10270 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactattgagagtaaacctcacccttaccttaatcgaagaa-caaag 10173  T
Q  226 ctctaca 232  Q
    |||||||    
T  10172 ctctaca 10166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 67167 - 67243
Alignment:
Q  133 ttcacctaaaccctctt-gttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||| |||||||||| |||||||||| || ||| ||||||||| |||||||||| |||||||||||||||||||||    
T  67167 ttcaccaaaaccctctttgttagaatcagaa-tcaaaattcaatctatactattgaaagtaaacctcacccttacctt 67243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 36548 - 36598
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  36548 aaaatcagaattataatctatactaatgagagtaaacctcacccttacctt 36598  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 38929177 - 38929036
Alignment:
Q  61 atctaagtacagttaacatggtttctatacattttcaattcaatc--tcagtaatcaaaacgtaa-ttccccaatttcacctaaaccctctt-gttagaa 156  Q
    |||||||| || ||||||||||| |||||||||||||||||||    |||  |||||||||  |  |||||||||| |||| |||||||||| |||||||    
T  38929177 atctaagttcaattaacatggttcctatacattttcaattcaagaaatcaa-aatcaaaacccatcttccccaatt-caccaaaaccctctttgttagaa 38929080  T
Q  157 tcaaaaatcagaattcaatccatactattgagagtaaacctcacc 201  Q
    ||| || ||||||||||||| |||||||||| |||||||||||||    
T  38929079 tcagaa-tcagaattcaatctatactattgaaagtaaacctcacc 38929036  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 23149570 - 23149652
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| ||||||||||||||||||||||||||||||||    
T  23149570 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactattgagagtaaacctcacccttacctt 23149652  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 23561360 - 23561442
Alignment:
Q  127 cccaatttcacctaaaccctcttgttagaatcaaaaatcagaa-ttcaatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||| || ||| |||||||| ||||| |||||||| |||||| || |||| ||||||||||||||||||||||||||||||||    
T  23561360 cccaaattaaccaaaaccctcatgttaaaatcaaaa-tcagaactttaatctatactattgagagtaaacctcacccttacctt 23561442  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 22795851 - 22795801
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  22795851 aaaatcagaattataatccatactattgaaagtaaacctcacccttacctt 22795801  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 6743351 - 6743301
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  6743351 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 6743301  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 43694472 - 43694522
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  43694472 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 43694522  T

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Target: scaffold0395 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 1441 - 1366
Alignment:
Q  133 ttcacctaaaccctcttgttagaatcaaaaatcagaattcaatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||  |||||||| | |||| ||||||||||||||||    
T  1441 ttcaccaaaaccctcttggtagaatcaaaa-tcagaattcaatatatactattaaaagtagacctcacccttacctt 1366  T

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Target: scaffold0222 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 4232 - 4180
Alignment:
Q  158 caaaaatcagaattcaa-tccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  4232 caaaaatcagaattaaaatccatactattgaaagtaaacctcacccttacctt 4180  T

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Target: scaffold0192 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 21825 - 21877
Alignment:
Q  158 caaaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  21825 caaaaatcagaattataatctatactattgagagtaaacctcacccttacctt 21877  T

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Target: scaffold0139 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 2113 - 2063
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  2113 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 2063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 91791 - 91741
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  91791 aaaatcagaattacaatctatactattgaaagtaaacctcacccttacctt 91741  T

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Target: scaffold0028; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 46084 - 46034
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  46084 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 46034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 51488 - 51438
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  51488 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 51438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0610 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0610
Description:

Target: scaffold0610; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 6517 - 6553
Alignment:
Q  173 aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||||| |||||||||||||||||||||    
T  6517 aatccatactattgaaagtaaacctcacccttacctt 6553  T

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Target: scaffold0203 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 16454 - 16418
Alignment:
Q  173 aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16454 aatccatactattgaaagtaaacctcacccttacctt 16418  T

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Target: scaffold0266 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 23981 - 24031
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  |||| |||||||||| |||||||||||||||||||||    
T  23981 aaaatcagaattttaatctatactattgaaagtaaacctcacccttacctt 24031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 5971 - 5921
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||| |||| ||||| |||||||||| |||||||||||||||||||||    
T  5971 aaaatcaaaattacaatctatactattgaaagtaaacctcacccttacctt 5921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 27283 - 27333
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||| |||||    
T  27283 aaaatcagaattacaatctatactattgaaagtaaacctcaccctcacctt 27333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 29250 - 29200
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  29250 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 29200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 34651 - 34601
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  34651 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 34601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 71543 - 71593
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  71543 aaaatcagaattacaatctatactattgaaagtaaatctcacccttacctt 71593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 124120 - 124070
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttacctt 209  Q
    |||||||||||| ||||| | |||||||| |||||||||||||||||||||    
T  124120 aaaatcagaattacaatctacactattgaaagtaaacctcacccttacctt 124070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 80358 - 80308
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  |||| |||||||||| |||||||||||||||||||||    
T  80358 aaaatcagaattataatctatactattgaaagtaaacctcacccttacctt 80308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 100080 - 100030
Alignment:
Q  160 aaaatcagaattc-aatccatactattgagagtaaacctcacccttacctt 209  Q
    ||||||||||||  |||| |||||||||| |||||||||||||||||||||    
T  100080 aaaatcagaattataatctatactattgaaagtaaacctcacccttacctt 100030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 625 - 677
Alignment:
Q  182 tattgagagtaaacctcacccttaccttgattgacgaatcaaagctctacaaa 234  Q
    |||||||||| |  |||||||||||||| ||| | ||||||||||||||||||    
T  625 tattgagagttagtctcacccttaccttaatttatgaatcaaagctctacaaa 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 26418 - 26470
Alignment:
Q  160 aaaatcagaatt-caatccatactattgagagtaaacctcacccttaccttga 211  Q
    |||||||||||| ||| | |||||||||| ||||||| |||||||||||||||    
T  26418 aaaatcagaattacaaactatactattgaaagtaaacgtcacccttaccttga 26470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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