View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_26 (Length: 270)
Name: NF0663_low_26
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3723715 - 3723951
Alignment:
| Q |
1 |
ttaaagatcatttaaatnnnnnnntagatatataaatcaacttcacatcagaatgagagaatatcaactatcaattatcagtttaaaataatttgatgat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3723715 |
ttaaagatcatttaaataaaaaattagatatataaaccaacttcacatcagaatgagagaatatcaactatcaattatcagtttgaaataatttgatgat |
3723814 |
T |
|
| Q |
101 |
aaggtcacaaacaaagttttgatgagcaaatcacatgtgaacttaactgcaacaaaataatcataaatatgtaattatgctaaaaaagacagtgaatatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723815 |
aaggtcacaaacaaagttttgatgagcaaatcacatgtgaacttaactgcaacaaaataatcataaatatgtaattatgctaaaaaagacagtgaatatc |
3723914 |
T |
|
| Q |
201 |
aggggacattgaatctaacctgtgacctataacaaaa |
237 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| |
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|
| T |
3723915 |
aggggacattgaatataacctgcgacctataacaaaa |
3723951 |
T |
|
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