View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0663_low_29 (Length: 259)

Name: NF0663_low_29
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0663_low_29
NF0663_low_29
[»] chr1 (5 HSPs)
chr1 (16-236)||(9883435-9883655)
chr1 (18-211)||(9260708-9260894)
chr1 (20-98)||(31917020-31917098)
chr1 (21-110)||(9851177-9851266)
chr1 (18-153)||(31921159-31921293)
[»] chr4 (8 HSPs)
chr4 (18-112)||(19100061-19100155)
chr4 (18-137)||(22321809-22321928)
chr4 (49-114)||(19314599-19314664)
chr4 (21-153)||(20942051-20942183)
chr4 (32-94)||(19328194-19328256)
chr4 (18-94)||(10717157-10717233)
chr4 (18-94)||(10930927-10931003)
chr4 (23-75)||(20871456-20871508)
[»] chr6 (3 HSPs)
chr6 (49-115)||(28912939-28913005)
chr6 (24-93)||(22427100-22427169)
chr6 (18-94)||(31986543-31986619)
[»] scaffold0050 (1 HSPs)
scaffold0050 (29-152)||(33407-33530)
[»] chr2 (1 HSPs)
chr2 (28-98)||(33851550-33851620)
[»] scaffold0512 (1 HSPs)
scaffold0512 (18-82)||(10750-10814)
[»] chr3 (1 HSPs)
chr3 (22-98)||(21304480-21304556)
[»] chr5 (1 HSPs)
chr5 (20-94)||(26332580-26332654)
[»] scaffold0032 (1 HSPs)
scaffold0032 (49-153)||(91723-91827)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 9883655 - 9883435
Alignment:
Q  16 aagcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcat 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883655 aagcaaaggaggaaaaatatgtctcaaattcgtgtgtttgtttatgctttaatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcat 9883556  T
Q  116 ttttcacatcattttctaattttcaaatatatcttataacaatattttttgttcacatttgagtaatatccatttttcttatttgtctatatagctacct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883555 ttttcacatcattttctaattttcaaatatatcttataacaatattttttgttcacatttgagtaatatccatttttcttatttgtctatatagctacct 9883456  T
Q  216 ttccatgcgtttctgatgatg 236  Q
    |||||||||||||||||||||    
T  9883455 ttccatgcgtttctgatgatg 9883435  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 9260894 - 9260708
Alignment:
Q  18 gcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcattt 117  Q
    |||||||||| |||||||| |||||| || | | ||| |||||||||| | |||||||||||||||||| |||||||         || |||||||||||    
T  9260894 gcaaaggaggtaaaatatggctcaaaatcttgtatttttttatgctttaaccatctttctatctcaattgcttgttg---------caggtatgtcattt 9260804  T
Q  118 ttcacatcattttctaattttcaaatatatcttataacaatattttttgttcacatttgagta--atatccatttttcttatttgtctatatagct 211  Q
    |||||| ||||||||| ||| ||||| |||||||||||| |||||||||||||||||||||||  |||| ||||||||||| |||||||| |||||    
T  9260803 ttcacaccattttctattttgcaaatctatcttataacattattttttgttcacatttgagtagtatattcatttttcttaattgtctatgtagct 9260708  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 31917020 - 31917098
Alignment:
Q  20 aaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 98  Q
    |||||||||||||||||  ||||||||  || |||||||||||||| ||||||||| | |||| |||||||||||||||    
T  31917020 aaaggaggaaaaatatgattcaaattctcatatttgtttatgctttgatcatctttatttctctatttcttgttgtaac 31917098  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 9851177 - 9851266
Alignment:
Q  21 aaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtat 110  Q
    |||||||||||||||| ||||||| |  || ||| |||||||||| |||||| ||||||||| |  |||||||||| | |||| ||||||    
T  9851177 aaggaggaaaaatatggctcaaatactcatatttatttatgctttgatcatcgttctatctctacgtcttgttgtatcaagtaaaagtat 9851266  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 31921159 - 31921293
Alignment:
Q  18 gcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcattt 117  Q
    ||||||||||| ||||||| |||||| ||  || ||| ||||||||||  ||||| || | |||| |||||||||||||||  ||  |||||| ||| ||    
T  31921159 gcaaaggaggacaaatatgactcaaactctcatatttatttatgctttattcatcgttgtttctctatttcttgttgtaacttgtgaaagtatatca-tt 31921257  T
Q  118 ttcacatcattttctaattttcaaatatatcttata 153  Q
    || ||| ||||||| | ||||| ||| |||||||||    
T  31921258 ttaacaccattttcaatttttctaatttatcttata 31921293  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 19100061 - 19100155
Alignment:
Q  18 gcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgt 112  Q
    ||||||||| ||||||||| || |||||   || |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||||||||    
T  19100061 gcaaaggagaaaaaatatggctaaaattttcatctttgtttatgctttgatcatttttctttctcaatttcttgttataacaagtagaagtatgt 19100155  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 22321809 - 22321928
Alignment:
Q  18 gcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcattt 117  Q
    ||||||||| ||||||||| |||||||||   |||||| ||||| ||| ||||||| | | |||  ||||||||||||||| | |    |||||||||||    
T  22321809 gcaaaggagaaaaaatatggctcaaattctcttgtttgcttatgttttcatcatctctatttctttatttcttgttgtaaccaatggtggtatgtcattt 22321908  T
Q  118 ttcacatcattttctaattt 137  Q
    |||| | |||||||||||||    
T  22321909 ttcataccattttctaattt 22321928  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 19314599 - 19314664
Alignment:
Q  49 atgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtca 114  Q
    |||||| |||||||| | ||||||||||| ||||||||| |||||||||  | |||||||||||||    
T  19314599 atgtttatttatgctctgatcatctttctctctcaattttttgttgtaatcaatacaagtatgtca 19314664  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 20942051 - 20942183
Alignment:
Q  21 aaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttc 120  Q
    |||||||||||||| |  ||||||||  |||||||||| |||||| ||||||| | | |  | |||||||||| |||| ||||   |||||| |||||||    
T  20942051 aaggaggaaaaatacggttcaaattctcatgtttgtttctgctttgatcatctatattttcctatttcttgttataactagtagcggtatgtaatttttc 20942150  T
Q  121 acatcattttctaattttcaaatatatcttata 153  Q
    ||| ||||||  || |||| ||| |||||||||    
T  20942151 acaccatttttaaaatttctaatttatcttata 20942183  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 19328194 - 19328256
Alignment:
Q  32 atatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttg 94  Q
    ||||| ||||||||  ||||||| |||||||||| ||||||||||| || | |||||||||||    
T  19328194 atatggctcaaattattatgtttttttatgctttgatcatctttctttccccatttcttgttg 19328256  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 10717233 - 10717157
Alignment:
Q  18 gcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttg 94  Q
    ||||| ||||||||||||| ||||||||| | | | ||||||||||||  ||||| || | |||| |||||||||||    
T  10717233 gcaaatgaggaaaaatatggctcaaattcttttttatgtttatgctttgctcatccttttttctccatttcttgttg 10717157  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 10931003 - 10930927
Alignment:
Q  18 gcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttg 94  Q
    ||||| ||||||||||||| ||||||||| | | | ||||||||||||  ||||| || | |||| |||||||||||    
T  10931003 gcaaatgaggaaaaatatggctcaaattcttttttatgtttatgctttgctcatccttttttctccatttcttgttg 10930927  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 20871456 - 20871508
Alignment:
Q  23 ggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatcttt 75  Q
    |||||||||| ||| || ||||||  ||||||||||||||||| |||||||||    
T  20871456 ggaggaaaaacatggctaaaattctcatgtttgtttatgctttgatcatcttt 20871508  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 28912939 - 28913005
Alignment:
Q  49 atgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcat 115  Q
    ||||||||||||| ||| ||||||||||| |||||||||||| ||||||| |||| ||||| |||||    
T  28912939 atgtttgtttatgttttgatcatctttctttctcaatttcttattgtaaccagtagaagtaagtcat 28913005  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 22427100 - 22427169
Alignment:
Q  24 gaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgtt 93  Q
    |||||||||||||  ||||  ||  |||||| |||||||||| |||||||||||||||| |||| |||||    
T  22427100 gaggaaaaatatggttcaatatctcatgtttctttatgctttcatcatctttctatctctatttgttgtt 22427169  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 31986619 - 31986543
Alignment:
Q  18 gcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttg 94  Q
    |||||||||||||||||||  ||||  ||  ||||||||||||| ||| |||||| |||| |||  |||||||||||    
T  31986619 gcaaaggaggaaaaatatggttcaatatctcatgtttgtttatgttttgatcatccttctttctatatttcttgttg 31986543  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 33407 - 33530
Alignment:
Q  29 aaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcatt 128  Q
    |||| ||||||||||||   ||||||| ||||| ||| ||||||||||| |||| ||||| ||||| ||| | || | |||||| |||||| ||| ||||    
T  33407 aaaacatgtctcaaattttcatgtttgcttatgttttgatcatctttctttctctatttcatgttgaaacaaatatacgtatgttatttttaacaacatt 33506  T
Q  129 ttctaattttcaaatatatcttat 152  Q
    ||| ||||||| ||| ||| ||||    
T  33507 ttcaaattttctaatttatattat 33530  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 33851550 - 33851620
Alignment:
Q  28 aaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 98  Q
    ||||||||| |||||||||  |||||  |||||| ||| ||||||||||| |||| |||||||||||||||    
T  33851550 aaaaatatggctcaaattctcatgttcatttatgttttgatcatctttctttctctatttcttgttgtaac 33851620  T

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Target: scaffold0512 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 10814 - 10750
Alignment:
Q  18 gcaaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctc 82  Q
    |||||||| |||||||||| |||| ||||  ||||||||||||||||| || |||||||| ||||    
T  10814 gcaaaggaagaaaaatatggctcacattctcatgtttgtttatgctttgattatctttctttctc 10750  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 21304556 - 21304480
Alignment:
Q  22 aggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 98  Q
    |||| |||||||||| ||||||||| ||  ||| ||||||||||||| ||| ||||||||  |||| ||||||||||    
T  21304556 aggacgaaaaatatggctcaaattcttaaatttatttatgcttttataatccttctatctttattttttgttgtaac 21304480  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 26332580 - 26332654
Alignment:
Q  20 aaaggaggaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttg 94  Q
    |||| |||||||||||| || || ||   ||||||||||||||||| |||| |||||| |||| |||||||||||    
T  26332580 aaagaaggaaaaatatggctaaattttccatgtttgtttatgctttgatcaactttctttctctatttcttgttg 26332654  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 91723 - 91827
Alignment:
Q  49 atgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcattttctaattttcaaatatatc 148  Q
    |||||||||  |||||| ||||||||||| |||| |||| | |||| ||| |  | ||||||||| ||||||||| |||||||  |||||| | | ||||    
T  91723 atgtttgttggtgctttgatcatctttctttctctatttttggttgaaaccaaaaaaagtatgtcttttttcacaccattttcatattttctagtttatc 91822  T
Q  149 ttata 153  Q
    |||||    
T  91823 ttata 91827  T

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