View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0663_low_39 (Length: 229)
Name: NF0663_low_39
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0663_low_39 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 15658035 - 15658179
Alignment:
| Q |
1 |
aagcatcatttggctggaacgagtagagatgttgtggtttgtccgtcagttcctctggatgttaagaaacttatgcaagataatgttaataagttacaaa |
100 |
Q |
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| T |
15658035 |
aagcatcatttggctggaacgagtagagatgttgcggtttgtccgtcggttcctctggatgttaagaaacttatgcaagataaggttaataagttacaaa |
15658134 |
T |
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| Q |
101 |
agaagctgctagaaaaagctaatgtgatagttgtcgatgctgatg |
145 |
Q |
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| T |
15658135 |
agaagctgctagaaaaagctaatttgatagttgtcgatgctgatg |
15658179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 243960 - 244108
Alignment:
| Q |
1 |
aagcatcatttggctggaacgagtagagatgttgtggtttgtccgtcagttcctctggatgttaagaaacttatgcaagataatgttaataagttacaaa |
100 |
Q |
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||||||||||| |||||||||||||||||||| | ||||||||| ||||||| ||||||||||||| ||||||| |||| ||| |||||||||||| |
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| T |
243960 |
aagcatcatttaactggaacgagtagagatgtttcgccttgtccgtcggttcctccggatgttaagaaagttatgcaggatagggttgataagttacaaa |
244059 |
T |
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| Q |
101 |
agaag-ctgctagaaaaagctaatgtgatagttgtcgatgctgatgatg |
148 |
Q |
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| T |
244060 |
agaagtttgctaaaaaaagctaatttgttagttgtcgatgctgctgatg |
244108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 246500 - 246354
Alignment:
| Q |
1 |
aagcatcatttggctggaacgagtagagatgttgtggtttgtccgtcagttcctctggatgttaagaaacttatgcaagataatgttaataagttacaaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||| | || ||||| ||||||| ||||||||||||| ||||| | |||| ||| ||||||||| || |
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| T |
246500 |
aagcatcatttggctggaacgagcagagatgtttcgccatgcccgtcggttcctccggatgttaagaaaattatgtaggatagggttgataagttaccaa |
246401 |
T |
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| Q |
101 |
agaagctgctagaaaaagctaatgtgatagttgtcgatgctgatgat |
147 |
Q |
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| T |
246400 |
agaagttgctaaaaaaagctaatttgttagttgtcgatgctgctgat |
246354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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