View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0663_low_6 (Length: 456)

Name: NF0663_low_6
Description: NF0663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0663_low_6
NF0663_low_6
[»] chr2 (8 HSPs)
chr2 (94-428)||(44630881-44631205)
chr2 (94-428)||(44797861-44798185)
chr2 (169-428)||(35161998-35162253)
chr2 (280-428)||(39840359-39840504)
chr2 (242-428)||(39845273-39845468)
chr2 (118-240)||(39845115-39845241)
chr2 (94-144)||(35161920-35161970)
chr2 (163-215)||(39840291-39840348)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 94 - 428
Target Start/End: Complemental strand, 44631205 - 44630881
Alignment:
Q  94 aaatgcaacatcctccttcgtcctctgctgctctgaaaccccgcagaagaag---cccagttcctcgatctatgttatcaagtggtgagtctgttcgtta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||| || |||         |||||||||||||||| ||||    
T  44631205 aaatgcaacatcctccttcgtcctctgctgctctgaaaccccgcagaagaagaagctcagttcttcaatc---------aagtggtgagtctgttggtta 44631115  T
Q  191 gttatgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaa 290  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44631114 ----tgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaa 44631019  T
Q  291 tttaatcatctatgattcatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgcca 390  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44631018 tttaatcatctatgattaatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgcca 44630919  T
Q  391 ctttggcaatacgggattataattcacaaactcagaac 428  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44630918 ctttggcaatacgggattataattcacaaactcagaac 44630881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 94 - 428
Target Start/End: Complemental strand, 44798185 - 44797861
Alignment:
Q  94 aaatgcaacatcctccttcgtcctctgctgctctgaaaccccgcagaagaag---cccagttcctcgatctatgttatcaagtggtgagtctgttcgtta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||| || |||         |||||||||||||||| ||||    
T  44798185 aaatgcaacatcctccttcgtcctctgctgctctgaaaccccgcagaagaagaagctcagttcttcaatc---------aagtggtgagtctgttggtta 44798095  T
Q  191 gttatgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaa 290  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44798094 ----tgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaa 44797999  T
Q  291 tttaatcatctatgattcatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgcca 390  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44797998 tttaatcatctatgattaatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgcca 44797899  T
Q  391 ctttggcaatacgggattataattcacaaactcagaac 428  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44797898 ctttggcaatacgggattataattcacaaactcagaac 44797861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 169 - 428
Target Start/End: Original strand, 35161998 - 35162253
Alignment:
Q  169 caagtggtgagtctgttcgttagttatgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatga 268  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35161998 caagtggtgagtctgttcgtta----tgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatga 35162093  T
Q  269 taatgtgttccattgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaag 368  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35162094 taatgtgttccattgtagctaatttaatcatcgatgattaatttttcctttctctacttttctatcagattttaatgatatcaaagatcctaccaaaaag 35162193  T
Q  369 gataggataaccaaatgtgccactttggcaatacgggattataattcacaaactcagaac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162194 gataggataaccaaatgtgccactttggcaatacgggattataattcacaaactcagaac 35162253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 280 - 428
Target Start/End: Original strand, 39840359 - 39840504
Alignment:
Q  280 attgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataac 379  Q
    ||||||||||||||||||    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  39840359 attgtagctaatttaatcc---atgattaattgttcctttctctacttttctatcagattttaatgagatcaaagatcctatcgaaaaggataggataac 39840455  T
Q  380 caaatgtgccactttggcaatacgggattataattcacaaactcagaac 428  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  39840456 caaatgtgccactttggcaatacaagattataattcacaaactcagaac 39840504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 428
Target Start/End: Original strand, 39845273 - 39845468
Alignment:
Q  242 cttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagatttt 341  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||   ||| |||||| ||| |||||||||||||||||||||||||||||    
T  39845273 cttgttggaagatgattaatgacatgataatgtgttccattgtagttaattta---atcgatgattaattgttcctttctctacttttctatcagatttt 39845369  T
Q  342 aatga------------gatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatacgggattataattcacaaactcagaac 428  Q
    ||| |             ||| || |||  | | ||||||||||| | | |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39845370 aatcaaatcgaaaatcgaatcgaaaatcaaatcgaaaaggataggcttatcaaatgtgtcactttggcaatacgggattataattcacaaactcggaac 39845468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 39845115 - 39845241
Alignment:
Q  118 ctgctgctctgaaaccccgcagaagaagcccagttcctcgatctatgttatcaagtggtgagtctgttcgtta---gttatgttgattcactattcattc 214  Q
    ||||| ||||||||||||||||||||||| || ||| || |||| ||||| || |||||||||||||||||||   ||||||||||||||||||||||||    
T  39845115 ctgctcctctgaaaccccgcagaagaagcgcaattcgtcaatctctgttaccatgtggtgagtctgttcgttactcgttatgttgattcactattcattc 39845214  T
Q  215 cct-gctgcaattcaatggatatatat 240  Q
    |||  ||||||||||||||||||||||    
T  39845215 cctccctgcaattcaatggatatatat 39845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 35161920 - 35161970
Alignment:
Q  94 aaatgcaacatcctccttcgtcctctgctgctctgaaaccccgcagaagaa 144  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  35161920 aaatgcaacatcctccttcgtcttctgctgctctgaaatcccgcagaagaa 35161970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 39840291 - 39840348
Alignment:
Q  163 tgttatcaagtggtgagtctgttcgtta-----gttatgttgattcactattcattcc 215  Q
    ||||| ||| ||||||||||||||||||     |||||||||||||||||||||||||    
T  39840291 tgttaccaactggtgagtctgttcgttagttatgttatgttgattcactattcattcc 39840348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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