View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0664_high_10 (Length: 253)

Name: NF0664_high_10
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0664_high_10
NF0664_high_10
[»] chr8 (1 HSPs)
chr8 (1-233)||(44113049-44113281)
[»] chr1 (2 HSPs)
chr1 (159-233)||(51301970-51302043)
chr1 (10-55)||(51302135-51302181)
[»] chr4 (5 HSPs)
chr4 (173-233)||(50015992-50016051)
chr4 (159-232)||(18843167-18843239)
chr4 (159-232)||(18854635-18854707)
chr4 (94-137)||(18843256-18843300)
chr4 (94-137)||(18854724-18854768)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 44113281 - 44113049
Alignment:
Q  1 ttttgcttgtggggttttgttcttggttttgtctgttctgtgtccagcttgcctccttggttggcttttgtttgtattgtttcatcctagtacatctcgt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44113281 ttttgcttgtggggatttgttcttggttttgtctgttctgtgtccagcttgcctccttggttggcttttgtttgtattgtttcatcctagtacatctcgt 44113182  T
Q  101 gcatgagtgtggttttaatataagttgctctataactgcttttggnnnnnnnnnnnnnaccaaatgactgcttttagtattaattcctcatttggttgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||    
T  44113181 gcatgagtgtggttttaatataagttgctctataactgcttttggtatttttttttttaccaaatgactgcttttagtattaattcctcatttggttgta 44113082  T
Q  201 aaaattatgatattttatcaagtttgatgatgt 233  Q
    ||||||||||||||||||||||||| |||||||    
T  44113081 aaaattatgatattttatcaagtttaatgatgt 44113049  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 51302043 - 51301970
Alignment:
Q  159 accaaatgactgcttttagtattaattcctcatttggttgtaaaaattatgatattttatcaagtttgatgatgt 233  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  51302043 accaaatgactgcgtttggtattaattcctcgtttggttgtaaaa-ttatgatattttatcaagtttgatgatgt 51301970  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 51302181 - 51302135
Alignment:
Q  10 tggggttttgttcttggttttg-tctgttctgtgtccagcttgcctc 55  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||    
T  51302181 tggggatttgttcttggtttttatctgttctgtgtccagcttgcctc 51302135  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 50016051 - 50015992
Alignment:
Q  173 tttagtattaattcctcatttggttgtaaaaattatgatattttatcaagtttgatgatgt 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  50016051 tttagtattaattcctcatttggttgt-aaaattatgatattttatcaagtttaatgatgt 50015992  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 18843239 - 18843167
Alignment:
Q  159 accaaatgactgcttttagtattaattcctcatttggttgtaaaaattatgatattttatcaagtttgatgatg 232  Q
    ||||||||| || |||||||||||||||||  | ||||||| |||||||||||||||||| |||||| ||||||    
T  18843239 accaaatgattgattttagtattaattccttgtctggttgt-aaaattatgatattttatgaagtttaatgatg 18843167  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 18854707 - 18854635
Alignment:
Q  159 accaaatgactgcttttagtattaattcctcatttggttgtaaaaattatgatattttatcaagtttgatgatg 232  Q
    ||||||||| || |||||||||||||||||  | ||||||| |||||||||||||||||| |||||| ||||||    
T  18854707 accaaatgattgattttagtattaattccttgtctggttgt-aaaattatgatattttatgaagtttaatgatg 18854635  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 18843300 - 18843256
Alignment:
Q  94 atctcgtgcatgagtgtggt-tttaatataagttgctctataact 137  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||    
T  18843300 atctcgtgcttgagtgtggaatttaatataagttgctctataact 18843256  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 18854768 - 18854724
Alignment:
Q  94 atctcgtgcatgagtgtggt-tttaatataagttgctctataact 137  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||    
T  18854768 atctcgtgcttgagtgtggaatttaatataagttgctctataact 18854724  T

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