View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0664_high_11 (Length: 246)
Name: NF0664_high_11
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 44622353 - 44622588
Alignment:
| Q |
11 |
ataatatcctgtgagattggacataaaatacaactgatatcaaacagcaaaaatgacaatcttaggttcatcacgagctaaaggaatagcgggataaaaa |
110 |
Q |
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| T |
44622353 |
ataatatcctgtgagattggacataaaatgcaactgatatcaaacagcaaaaatgacaatcttaggttcatcacgagctaaaggaatagcggtataaaaa |
44622452 |
T |
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| Q |
111 |
agcagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtactagat |
210 |
Q |
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| T |
44622453 |
agcagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgctatagctgctgtttggtaacagtttgtactagat |
44622552 |
T |
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| Q |
211 |
catattacgcatacataatagcaattttttaatatt |
246 |
Q |
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| T |
44622553 |
catattacgcataaataatagcaattttttaatatt |
44622588 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 34925253 - 34925343
Alignment:
| Q |
117 |
gttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtacta |
207 |
Q |
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| T |
34925253 |
gttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctatttgacaacattttgtacta |
34925343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 8558804 - 8558849
Alignment:
| Q |
138 |
aaaatagaagcttgttcaaattctgctatgctacaatgatatagct |
183 |
Q |
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| T |
8558804 |
aaaatagtagtttgttcaaattccgctatgctacaatgttatagct |
8558849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 38434252 - 38434183
Alignment:
| Q |
113 |
cagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagc |
182 |
Q |
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| T |
38434252 |
cagtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagc |
38434183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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