View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0664_high_12 (Length: 239)

Name: NF0664_high_12
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0664_high_12
NF0664_high_12
[»] chr4 (8 HSPs)
chr4 (1-219)||(18812631-18812849)
chr4 (1-151)||(10032648-10032796)
chr4 (69-151)||(18807513-18807594)
chr4 (5-65)||(18789271-18789331)
chr4 (17-151)||(42664922-42665055)
chr4 (72-156)||(42665175-42665259)
chr4 (161-216)||(18316277-18316332)
chr4 (104-151)||(19223142-19223189)
[»] chr6 (2 HSPs)
chr6 (1-151)||(25050852-25051003)
chr6 (9-146)||(30488430-30488567)
[»] chr1 (2 HSPs)
chr1 (1-151)||(1284820-1284968)
chr1 (30-119)||(33072760-33072847)
[»] scaffold0245 (2 HSPs)
scaffold0245 (1-151)||(9465-9613)
scaffold0245 (1-151)||(11087-11235)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-151)||(9793-9941)
[»] chr5 (5 HSPs)
chr5 (1-151)||(4897392-4897539)
chr5 (17-151)||(33689855-33689988)
chr5 (32-158)||(6742411-6742539)
chr5 (17-144)||(33688153-33688279)
chr5 (72-151)||(21637297-21637376)
[»] chr3 (5 HSPs)
chr3 (1-148)||(548088-548232)
chr3 (33-148)||(26667113-26667227)
chr3 (17-147)||(25836364-25836493)
chr3 (161-217)||(4493912-4493968)
chr3 (71-151)||(9032867-9032947)
[»] chr2 (5 HSPs)
chr2 (32-144)||(14007624-14007739)
chr2 (30-151)||(20957430-20957551)
chr2 (30-141)||(20957612-20957723)
chr2 (172-219)||(5524851-5524898)
chr2 (100-157)||(8759984-8760041)
[»] chr7 (6 HSPs)
chr7 (30-151)||(29598095-29598215)
chr7 (100-156)||(21631181-21631237)
chr7 (100-151)||(9878328-9878379)
chr7 (28-151)||(21633309-21633431)
chr7 (100-156)||(21633142-21633198)
chr7 (100-151)||(21631411-21631462)
[»] chr8 (2 HSPs)
chr8 (34-142)||(35674950-35675058)
chr8 (109-151)||(35673477-35673519)
[»] scaffold0160 (1 HSPs)
scaffold0160 (39-160)||(28393-28512)
[»] scaffold0060 (1 HSPs)
scaffold0060 (32-151)||(9081-9200)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 18812631 - 18812849
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  18812631 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcgtaactaactcttaactacctaactaagta 18812730  T
Q  101 actaaccatagtttacatattatctaattatggtttattcactatactctactaataactgttgcttcagcaagcaatggtcacgccactctggcggtct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||    
T  18812731 actaaccatagtttacatattatctaattatggtttattcactatactctactaataaccgttgcttcagcaagcaatggtcacgccactctcacggtct 18812830  T
Q  201 ccaatgaaaaaagtgatga 219  Q
    |||||||||||||||||||    
T  18812831 ccaatgaaaaaagtgatga 18812849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 10032648 - 10032796
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagta 100  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||  |||||  |||||||||| |||||| ||  |    
T  10032648 tattgaattagaatgaaaaagataactagagagtacaatagtgagagttatttatagggtgagttagt--ctaaccgactcttaactacctaaccaacca 10032745  T
Q  101 actaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||||||||| | | |||| |||||||||||| ||||||||||    
T  10032746 actaaccatagtttacatctcaactaactatggtttattctctatactcta 10032796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 18807513 - 18807594
Alignment:
Q  69 tcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18807513 tcctaactaactctta-ctacctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactcta 18807594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 18789271 - 18789331
Alignment:
Q  5 gaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagtt 65  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18789271 gaattagattgaaaaagataaccatagagtacaatattgagagatatttatagagtgagtt 18789331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 42665055 - 42664922
Alignment:
Q  17 aaaagataaccatagagtacaatagtgagagatatttata-gagtgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagttta 115  Q
    |||||||||| | | |||||||| ||||||  |||||||| | ||||||||||  ||||||||||||||||| |||||  ||  |||||||| |||||||    
T  42665055 aaaagataacaagatagtacaattgtgagaactatttataagggtgagttagt--ctaactaactcttaactacctaaacaaccaactaaccgtagttta 42664958  T
Q  116 catattatctaattatggtttattcactatactcta 151  Q
    ||||||| |||| ||||||||||||| |||||||||    
T  42664957 catattaactaactatggtttattcattatactcta 42664922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 42665175 - 42665259
Alignment:
Q  72 taactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaattatggtttattcactatactctactaat 156  Q
    |||||||||||||||| |||||  || |||||||||||| ||||||||||| |||| |||||||||||||||||| |||| ||||    
T  42665175 taactaactcttaactacctaaacaaataactaaccataatttacatattaactaactatggtttattcactatattctaataat 42665259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 18316277 - 18316332
Alignment:
Q  161 gttgcttcagcaagcaatggtcacgccactctggcggtctccaatgaaaaaagtga 216  Q
    |||||||||| ||||||||||||||| ||| |||||| || ||||| |||||||||    
T  18316277 gttgcttcagaaagcaatggtcacgcaactgtggcggacttcaatggaaaaagtga 18316332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 19223142 - 19223189
Alignment:
Q  104 aaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||| |||||| |||| ||||||||||||||| |||||||    
T  19223142 aaccatagtttatatattaactaactatggtttattcactgtactcta 19223189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 25051003 - 25050852
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagt-tcctaactaactcttaactgcctaactaagt 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  25051003 tattgaattaaattgaaaaagataaccatagagtacaatagtgaaatatatttatagagtgagttagtctcctaactaactcttaactacctaaccaagt 25050904  T
Q  100 aactaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25050903 aactaaccatagtttacatattatctaactatggtttattcactatactcta 25050852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 30488567 - 30488430
Alignment:
Q  9 tagattga-aaaagataaccatagagtacaatagtgagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaac 106  Q
    |||||||| |||||||||| | ||| |||||| ||||||| ||||||||| | |||||||||  |||||||||| ||||||  ||||| ||  ||| |||    
T  30488567 tagattgataaaagataactagagattacaatggtgagagctatttataggggtgagttagt--ctaactaacttttaactatctaaccaaccaacaaac 30488470  T
Q  107 catagtttacatattatctaattatggtttattcactata 146  Q
    |||| ||||||||||| |||| ||||||||||||||||||    
T  30488469 cataatttacatattaactaactatggtttattcactata 30488430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 1284968 - 1284820
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagta 100  Q
    |||||||||||||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||||  ||||||||||||||||| |||||| ||  |    
T  1284968 tattgaattagattgaaaaagataactagagagtacaatagtgatagttatttatagggtgagttagt--ctaactaactcttaactacctaaccaacca 1284871  T
Q  101 actaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||||||||| | | |||| ||||||||||||  |||||||||    
T  1284870 actaaccatagtttacatctcaactaactatggtttattctatatactcta 1284820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 33072847 - 33072760
Alignment:
Q  30 agagtacaatagtgagagatatttata-gagtgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacata 119  Q
    |||||||||||||||||| |||||||| | |||||| ||   ||||||||||||||||| |||||| ||  ||||||||||||||||||||    
T  33072847 agagtacaatagtgagagttatttataagggtgagtcag---ctaactaactcttaactacctaaccaaccaactaaccatagtttacata 33072760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 9613 - 9465
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagta 100  Q
    |||||||||||||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||||  ||||||||| ||||||| |||||| ||  |    
T  9613 tattgaattagattgaaaaagataactagagagtacaatagtgatagttatttatagggtgagttagt--ctaactaacacttaactacctaaccaacca 9516  T
Q  101 actaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||||||||| | | |||| ||||||||||||  |||||||||    
T  9515 actaaccatagtttacatctcaactaactatggtttattctatatactcta 9465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 11235 - 11087
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagta 100  Q
    |||||||||||||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||||  ||||||||||||||||| |||||| ||  |    
T  11235 tattgaattagattgaaaaagataactagagagtacaatagtgatagttatttatagggtgagttagt--ctaactaactcttaactacctaaccaacca 11138  T
Q  101 actaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    ||||||||||||||| || | | |||| ||||||||||||  |||||||||    
T  11137 actaaccatagtttatatctcaactaactatggtttattctatatactcta 11087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 9941 - 9793
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagta 100  Q
    |||||||||||||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||||  ||||||||| ||||||| |||||| ||  |    
T  9941 tattgaattagattgaaaaagataactagagagtacaatagtgatagttatttatagggtgagttagt--ctaactaacacttaactacctaaccaacca 9844  T
Q  101 actaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||||||||| | | |||| ||||||||||||  |||||||||    
T  9843 actaaccatagtttacatctcaactaactatggtttattctatatactcta 9793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 4897392 - 4897539
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagta 100  Q
    |||||||||||| |||||||| |||| | ||||||||||| |||||| ||||||||| ||||||||||  ||||||||||||||||| |||||  ||  |    
T  4897392 tattgaattagaatgaaaaagctaactagagagtacaatattgagagttatttatagggtgagttagt--ctaactaactcttaactacctaatcaacca 4897489  T
Q  101 actaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  4897490 actaaccatagtttac-cattatctaactatggtttattcactatactcta 4897539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 33689988 - 33689855
Alignment:
Q  17 aaaagataaccatagagtacaatagtgagagatatttata-gagtgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagttta 115  Q
    |||||||||| | | |||||||||||||||| |||||||| | |  |||||||  |||| | |||||||||| |||||||||  || || ||||||||||    
T  33689988 aaaagataacaaaatagtacaatagtgagagctatttataagggcaagttagt--ctaattgactcttaactacctaactaaccaattatccatagttta 33689891  T
Q  116 catattatctaattatggtttattcactatactcta 151  Q
    | ||||| |||| ||||||||| ||| |||||||||    
T  33689890 cttattaactaactatggtttaatcattatactcta 33689855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 6742539 - 6742411
Alignment:
Q  32 agtacaatagtgagagatatttataga-gtgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaatta 130  Q
    |||||||||||||||| |||||||||| || | ||||||  |||||||||||||| | |||||| ||  ||||||||||| |||| ||||||  ||| ||    
T  6742539 agtacaatagtgagagttatttatagaagtaaattagtt--taactaactcttaattacctaaccaaccaactaaccataatttatatattaattaacta 6742442  T
Q  131 ---tggtttattcactatactctactaataa 158  Q
       ||||||||||||||| ||||| ||||||    
T  6742441 tattggtttattcactatcctctaataataa 6742411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 33688279 - 33688153
Alignment:
Q  17 aaaagataaccatagagtacaatagtgagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagttta 115  Q
    |||||||||| | ||| |||||| ||||||| |||| |||||| || ||||||  || | |||||||||| | |||||| || |||| ||||||| ||||    
T  33688279 aaaagataacaagagaatacaatggtgagagctattaatagaggtgggttagt--cttagtaactcttaaatacctaaccaactaaccaaccataattta 33688182  T
Q  116 catattatctaattatggtttattcacta 144  Q
    ||||||| |||| ||||||||| ||||||    
T  33688181 catattaactaactatggtttaatcacta 33688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 21637297 - 21637376
Alignment:
Q  72 taactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||| ||||| |||||| ||  ||||||| ||||||  ||||| | |||| |||||||||||||||||||||||    
T  21637297 taactaactcctaactacctaaccaaccaactaactatagttctcatataaactaactatggtttattcactatactcta 21637376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 548232 - 548088
Alignment:
Q  1 tattgaattagattgaaaaagataaccatagagtacaatagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagta 100  Q
    |||||||||||| ||||||||||||  | ||||||||||| | | || ||||||||| ||||||||||  ||||||||||||||||| |||||| ||  |    
T  548232 tattgaattagaatgaaaaagataattagagagtacaatatttaaagttatttatagtgtgagttagt--ctaactaactcttaactacctaaccaacca 548135  T
Q  101 actaaccatagtttacatattatctaattatggtttattcactatact 148  Q
    ||||| ||||||||||  ||||||||| |||| |||||||||||||||    
T  548134 actaatcatagtttac-cattatctaaatatgatttattcactatact 548088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 26667113 - 26667227
Alignment:
Q  33 gtacaatagtgagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaattat 131  Q
    ||||||| ||||||| ||||||||| | |||||||||  ||||||||||||||||| |||||||||  ||||||||||| ||||||||||| |||| |||    
T  26667113 gtacaatggtgagagttatttataggggtgagttagt--ctaactaactcttaactacctaactaaccaactaaccataatttacatattaactaactat 26667210  T
Q  132 ggtttattcactatact 148  Q
    |||| ||||||||||||    
T  26667211 ggttaattcactatact 26667227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 25836493 - 25836364
Alignment:
Q  17 aaaagataaccatagagtacaatagtgagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagttta 115  Q
    |||||||||| | |||||||||| ||||||| ||||||||  | |||  ||||  ||||||||||| ||||| |||||||||  ||||| ||||||||||    
T  25836493 aaaagataacaagagagtacaatggtgagagttatttataaggatgaactagt--ctaactaactcctaactacctaactaaccaactagccatagttta 25836396  T
Q  116 catattatctaattatggtttattcactatac 147  Q
      ||| | |||| |||||||||||||||||||    
T  25836395 tctatcaactaactatggtttattcactatac 25836364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 4493968 - 4493912
Alignment:
Q  161 gttgcttcagcaagcaatggtcacgccactctggcggtctccaatgaaaaaagtgat 217  Q
    |||||||||| ||||||||||||||| ||| |||||| || ||||| ||||||||||    
T  4493968 gttgcttcagaaagcaatggtcacgcaactgtggcggacttcaatggaaaaagtgat 4493912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 9032867 - 9032947
Alignment:
Q  71 ctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    ||||||||||||||||| |  ||| ||  | ||||||||||||| ||||| | |||| |||| |||||||| |||||||||    
T  9032867 ctaactaactcttaactactcaaccaaccagctaaccatagttttcatatcaactaactatgatttattcattatactcta 9032947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 14007739 - 14007624
Alignment:
Q  32 agtacaatagtgagagatatttata-gagtgagttagttc--ctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaat 128  Q
    |||||||| ||||||| |||||||| | |||||| ||||   ||||||||||||||||| |||||| ||  ||||||||||||||||||||||| ||||     
T  14007739 agtacaatggtgagagttatttatatgggtgagtaagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttacatattaactaac 14007640  T
Q  129 tatggtttattcacta 144  Q
    ||||||||||||||||    
T  14007639 tatggtttattcacta 14007624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 20957551 - 20957430
Alignment:
Q  30 agagtacaatagt-gagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaa 127  Q
    ||||||||||||| ||||  ||||||||| | |||||||||  |||||||||||  |||| ||||||||| |||||||||||| ||||||||| | ||||    
T  20957551 agagtacaatagttgagacttatttataggggtgagttagt--ctaactaactcacaactacctaactaactaactaaccataatttacatataacctaa 20957454  T
Q  128 ttatggtttattcactatactcta 151  Q
     |||||||||||||||||||||||    
T  20957453 ctatggtttattcactatactcta 20957430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 20957723 - 20957612
Alignment:
Q  30 agagtacaatagt-gagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaa 127  Q
    ||||||||||||| ||||  ||||||||| | |||||||||  |||||||||||  |||| ||||||||| |||||||||||| ||||||||| | ||||    
T  20957723 agagtacaatagttgagacttatttataggggtgagttagt--ctaactaactcacaactacctaactaactaactaaccataatttacatataacctaa 20957626  T
Q  128 ttatggtttattca 141  Q
     |||||||||||||    
T  20957625 ctatggtttattca 20957612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 5524898 - 5524851
Alignment:
Q  172 aagcaatggtcacgccactctggcggtctccaatgaaaaaagtgatga 219  Q
    |||||||||||||||| || || ||| |||||||||||||||||||||    
T  5524898 aagcaatggtcacgcctctgtgacggactccaatgaaaaaagtgatga 5524851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 8760041 - 8759984
Alignment:
Q  100 aactaaccatagtttacatattatctaattatggtttattcactatactctactaata 157  Q
    ||||||||||||||||||||| | ||||||||| |||||| ||| |||| || |||||    
T  8760041 aactaaccatagtttacatatcaactaattatgatttatttactgtactataataata 8759984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 29598095 - 29598215
Alignment:
Q  30 agagtacaatagtgagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaat 128  Q
    |||||| ||| ||||||| ||||||||| | |||||||||  ||||||||||| ||||  ||||||  |  ||||||||||||||||||||||| ||||     
T  29598095 agagtataatggtgagagttatttataggggtgagttagt--ctaactaactcctaaccacctaacctacaaactaaccatagtttacatattaactaac 29598192  T
Q  129 tatggtttattcactatactcta 151  Q
    |||||||||||||||||||||||    
T  29598193 tatggtttattcactatactcta 29598215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 21631181 - 21631237
Alignment:
Q  100 aactaaccatagtttacatattatctaattatggtttattcactatactctactaat 156  Q
    ||||||||||||||||||||| | |||| ||||||||| ||||||||||||| ||||    
T  21631181 aactaaccatagtttacatatcaactaactatggtttactcactatactctaataat 21631237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 9878328 - 9878379
Alignment:
Q  100 aactaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||||||||    
T  9878328 aactaaccatagtttatatattaactacctatggtttattcactatactcta 9878379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 21633309 - 21633431
Alignment:
Q  28 atagagtacaatagtgagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatcta 126  Q
    |||||||||||| |||| || ||||||||| | ||| |||||   |||||||||| ||||  ||||||  |  ||||||||||||||||||||| | |||    
T  21633309 atagagtacaatggtgatagttatttatagtggtgaattagta--taactaactcctaaccacctaacctaccaactaaccatagtttacatatcaacta 21633406  T
Q  127 attatggtttattcactatactcta 151  Q
    |  |||||||| |||||||||||||    
T  21633407 acaatggtttactcactatactcta 21633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 21633142 - 21633198
Alignment:
Q  100 aactaaccatagtttacatattatctaattatggtttattcactatactctactaat 156  Q
    ||||||||||||||||||||| | |||| ||||||||| ||| ||||||||| ||||    
T  21633142 aactaaccatagtttacatatcaactaactatggtttactcattatactctaataat 21633198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 21631411 - 21631462
Alignment:
Q  100 aactaaccatagtttacatattatctaattatggtttattcactatactcta 151  Q
    ||||||||||||||||||||| | ||||  |||||||| |||||||||||||    
T  21631411 aactaaccatagtttacatatcaactaacaatggtttactcactatactcta 21631462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 35674950 - 35675058
Alignment:
Q  34 tacaatagt-gagagatatttatag-agtgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaattat 131  Q
    ||||||||| ||||| ||||||||| |||||||||||  ||||||||||| |||||  ||||||||  ||||||||||||||||||||||| |||| |||    
T  35674950 tacaatagttgagagttatttataggagtgagttagt--ctaactaactcctaactatctaactaaccaactaaccatagtttacatattaactaactat 35675047  T
Q  132 ggtttattcac 142  Q
    | |||||||||    
T  35675048 gatttattcac 35675058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 35673477 - 35673519
Alignment:
Q  109 tagtttacatattatctaattatggtttattcactatactcta 151  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  35673477 tagtttacatattaactaactatggtttattcactatactcta 35673519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 28512 - 28393
Alignment:
Q  39 tagtgagagatatttatagagtgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaattatggtttat 138  Q
    ||||| |||| ||| ||||||||||||| |  ||||||||||||||||||  |||| ||  ||||||||||||||||| ||| | |||| ||||||||||    
T  28512 tagtgtgagacattcatagagtgagttaat--ctaactaactcttaactgtataaccaaccaactaaccatagtttacctatcaactaactatggtttat 28415  T
Q  139 tcactatactctactaataact 160  Q
    ||| ||||||||| ||| ||||    
T  28414 tcaatatactctaataaaaact 28393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 9081 - 9200
Alignment:
Q  32 agtacaatagt-gagagatatttatagag-tgagttagttcctaactaactcttaactgcctaactaagtaactaaccatagtttacatattatctaatt 129  Q
    ||||||||||| ||||| ||||||||| | |||||||||   |||||||||| ||||| |||||| ||  |||||||||||||| |||||| | |||| |    
T  9081 agtacaatagtcgagagttatttataggggtgagttagtg--taactaactcctaactacctaaccaaacaactaaccatagttcacatataaactaact 9178  T
Q  130 atggtttattcactatactcta 151  Q
    ||||||||||||||||||||||    
T  9179 atggtttattcactatactcta 9200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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