View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0664_low_10 (Length: 333)
Name: NF0664_low_10
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 30 - 324
Target Start/End: Complemental strand, 838244 - 837950
Alignment:
| Q |
30 |
tatttttagtagggtctcttcaccttttggtatattaagtgcaactctattatgtaactaagtaccttaattaagcggataagccatcacacaatatttt |
129 |
Q |
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| T |
838244 |
tatttttagtagggtctcttcaccttttggtatattaagtgcaactctattatgtaactaagtaccttaattaagcggataagccatcacacaatatttt |
838145 |
T |
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| Q |
130 |
gaacaatatatattattataaactgataaggattttaggaacatacatgtaacataaattcaaacaagtaataatatatatgtggaagagaaactcattt |
229 |
Q |
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| T |
838144 |
gaacaatatatattattataaactgataaggattttaggaacatacatgtaacataaattcaaacaagtaataatatatatgtggatgagaaactcattt |
838045 |
T |
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| Q |
230 |
tcaatgaattgaaaccaaaatttcaaagtaatccttagccttcgaccagaatttattatcattagatccaatttcctctactctattgtctctgc |
324 |
Q |
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| T |
838044 |
tcaatgaattgaaaccaaactttcaaagtaatccttagccttcgaccataatttattatcattagatccaatttcctctactctattgtctctgc |
837950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 324
Target Start/End: Original strand, 829339 - 829481
Alignment:
| Q |
174 |
acatgtaacataaattcaaacaagtaataatatatatgtggaagagaaactcattttcaatgaattgaaaccaaaatttcaaagtaatccttagccttcg |
273 |
Q |
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| T |
829339 |
acatgtaacataaattcaaacaagtcata-------tgtgaaagagaaactcactttcatagaatcgaaaccaaactttcaa-gtaatccttagcttccg |
829430 |
T |
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| Q |
274 |
accagaatttattatcattagatccaatttcctctactctattgtctctgc |
324 |
Q |
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| T |
829431 |
accagaatatattatcattaattccaattttctctactctattgtatctgc |
829481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 10482528 - 10482452
Alignment:
| Q |
180 |
aacataaattcaaacaagtaataatatatatgtggaagagaaactcattttcaatgaattgaaaccaaaatttcaaagtaatcc |
263 |
Q |
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| T |
10482528 |
aacataaattcaaacaagtaata-------tgtggaagagaaactcactttcaatgagtcgaaaccaaactttcaacgtaatcc |
10482452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 10475540 - 10475427
Alignment:
| Q |
207 |
atatgtggaagagaaactcattttcaatgaattgaaaccaaaatttcaaagtaatccttagccttcgaccagaatttattatcattagatccaatttcct |
306 |
Q |
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| T |
10475540 |
atatgtggaagagaaactcactttcaacgtgtcgaaactaaactttcaacgtaatccttggcatgcaaccagaatatattattagtaattccaattcgct |
10475441 |
T |
|
| Q |
307 |
ctactctattgtct |
320 |
Q |
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||||||||||||| |
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| T |
10475440 |
ttactctattgtct |
10475427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 10468369 - 10468313
Alignment:
| Q |
207 |
atatgtggaagagaaactcattttcaatgaattgaaaccaaaatttcaaagtaatcc |
263 |
Q |
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| T |
10468369 |
atatgtggaagagaaactcactttcaatgagtcaaaaccaaactttcaacgtaatcc |
10468313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 25915057 - 25915111
Alignment:
| Q |
215 |
aagagaaactcattttcaatgaattgaaaccaaaatttcaaagtaatccttagcc |
269 |
Q |
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| T |
25915057 |
aagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcc |
25915111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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