View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0664_low_15 (Length: 294)

Name: NF0664_low_15
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0664_low_15
NF0664_low_15
[»] chr3 (28 HSPs)
chr3 (11-272)||(12269513-12269773)
chr3 (92-272)||(18439845-18440025)
chr3 (144-272)||(20630147-20630275)
chr3 (11-187)||(31224635-31224811)
chr3 (67-187)||(31415399-31415519)
chr3 (11-110)||(1988912-1989012)
chr3 (159-272)||(49969934-49970048)
chr3 (11-187)||(15447681-15447854)
chr3 (20-111)||(49389740-49389833)
chr3 (89-193)||(1465416-1465520)
chr3 (89-193)||(49389636-49389740)
chr3 (68-110)||(40812058-40812100)
chr3 (227-272)||(22307386-22307431)
chr3 (207-272)||(31415460-31415525)
chr3 (215-264)||(40812050-40812099)
chr3 (67-110)||(49969989-49970032)
chr3 (72-110)||(20630221-20630259)
chr3 (207-272)||(1988963-1989028)
chr3 (215-272)||(5841985-5842042)
chr3 (227-272)||(17538311-17538356)
chr3 (175-272)||(23413322-23413417)
chr3 (207-272)||(31224685-31224750)
chr3 (227-272)||(40807200-40807245)
chr3 (11-122)||(11912981-11913092)
chr3 (207-269)||(11912980-11913042)
chr3 (72-110)||(30175308-30175346)
chr3 (67-120)||(6808199-6808252)
chr3 (207-256)||(6808209-6808258)
[»] chr4 (20 HSPs)
chr4 (11-272)||(46642777-46643038)
chr4 (11-269)||(13844485-13844744)
chr4 (11-187)||(33186097-33186273)
chr4 (186-272)||(52873249-52873335)
chr4 (89-193)||(15099360-15099464)
chr4 (190-272)||(9923353-9923435)
chr4 (190-272)||(11479424-11479506)
chr4 (190-272)||(35812203-35812285)
chr4 (175-272)||(15868781-15868877)
chr4 (204-272)||(362189-362257)
chr4 (68-110)||(9923369-9923411)
chr4 (68-110)||(11479448-11479490)
chr4 (69-110)||(35812228-35812269)
chr4 (89-160)||(15190360-15190431)
chr4 (67-162)||(15880717-15880812)
chr4 (72-110)||(52873281-52873319)
chr4 (175-272)||(630846-630942)
chr4 (207-272)||(15880753-15880818)
chr4 (227-272)||(19609528-19609573)
chr4 (207-272)||(33186158-33186223)
[»] scaffold0116 (2 HSPs)
scaffold0116 (11-272)||(43700-43962)
scaffold0116 (11-224)||(47620-47834)
[»] chr6 (20 HSPs)
chr6 (11-272)||(25956537-25956799)
chr6 (11-272)||(27851111-27851373)
chr6 (11-187)||(20734128-20734304)
chr6 (159-272)||(19399814-19399928)
chr6 (190-272)||(18927880-18927962)
chr6 (204-272)||(31630637-31630705)
chr6 (67-162)||(2201139-2201234)
chr6 (67-162)||(22420987-22421082)
chr6 (68-110)||(18927896-18927938)
chr6 (67-110)||(19399830-19399873)
chr6 (227-272)||(18708704-18708749)
chr6 (207-272)||(20734178-20734243)
chr6 (207-272)||(22421023-22421088)
chr6 (227-272)||(23151069-23151114)
chr6 (227-272)||(27322221-27322266)
chr6 (67-132)||(34297006-34297071)
chr6 (208-272)||(34297001-34297065)
chr6 (218-272)||(2201175-2201229)
chr6 (72-110)||(31630651-31630689)
chr6 (215-272)||(28708678-28708735)
[»] chr1 (18 HSPs)
chr1 (11-272)||(28194365-28194627)
chr1 (11-272)||(43697316-43697578)
chr1 (89-195)||(49261349-49261455)
chr1 (89-194)||(20636859-20636964)
chr1 (89-193)||(35981693-35981797)
chr1 (186-272)||(43543053-43543139)
chr1 (67-162)||(51274325-51274420)
chr1 (68-110)||(48301083-48301125)
chr1 (204-272)||(46382667-46382733)
chr1 (67-145)||(12328592-12328670)
chr1 (72-110)||(43543069-43543107)
chr1 (215-257)||(48301082-48301124)
chr1 (207-256)||(51274319-51274368)
chr1 (218-272)||(12328597-12328651)
chr1 (207-256)||(8885469-8885518)
chr1 (77-110)||(46382684-46382717)
chr1 (72-121)||(51326904-51326953)
chr1 (67-111)||(8885468-8885512)
[»] chr5 (24 HSPs)
chr5 (11-272)||(5889092-5889353)
chr5 (11-187)||(21555060-21555236)
chr5 (11-187)||(21557726-21557902)
chr5 (11-187)||(12122202-12122378)
chr5 (171-272)||(29915150-29915251)
chr5 (159-272)||(21871627-21871739)
chr5 (159-272)||(21875907-21876019)
chr5 (89-193)||(21741538-21741642)
chr5 (13-186)||(31455686-31455862)
chr5 (67-165)||(24212385-24212483)
chr5 (13-186)||(31455073-31455249)
chr5 (207-272)||(12122252-12122317)
chr5 (207-272)||(21557776-21557841)
chr5 (207-272)||(24212424-24212489)
chr5 (74-179)||(30615759-30615864)
chr5 (72-110)||(29915197-29915235)
chr5 (67-132)||(36460220-36460285)
chr5 (207-272)||(36460226-36460291)
chr5 (92-180)||(17875216-17875304)
chr5 (220-272)||(30615812-30615864)
chr5 (67-162)||(35852643-35852738)
chr5 (207-272)||(21555110-21555175)
chr5 (207-256)||(31455765-31455814)
chr5 (207-256)||(35852695-35852744)
[»] scaffold0009 (2 HSPs)
scaffold0009 (87-272)||(85191-85376)
scaffold0009 (72-110)||(85207-85245)
[»] chr7 (34 HSPs)
chr7 (87-272)||(17232564-17232749)
chr7 (87-272)||(8468370-8468548)
chr7 (11-149)||(15439318-15439457)
chr7 (11-187)||(30820937-30821113)
chr7 (14-187)||(36685934-36686107)
chr7 (67-187)||(38480232-38480352)
chr7 (11-110)||(37727607-37727707)
chr7 (89-193)||(9389702-9389806)
chr7 (67-162)||(11092757-11092852)
chr7 (186-272)||(14270136-14270222)
chr7 (204-272)||(45847750-45847818)
chr7 (67-162)||(9320466-9320561)
chr7 (175-272)||(18302111-18302207)
chr7 (207-272)||(38480293-38480358)
chr7 (11-162)||(11085019-11085170)
chr7 (72-110)||(8468386-8468424)
chr7 (72-110)||(14270168-14270206)
chr7 (72-110)||(45847764-45847802)
chr7 (207-272)||(9320460-9320525)
chr7 (207-272)||(11092793-11092858)
chr7 (227-272)||(12371482-12371527)
chr7 (227-272)||(13148275-13148320)
chr7 (207-272)||(30820987-30821052)
chr7 (206-264)||(8851948-8852005)
chr7 (68-110)||(8851955-8851997)
chr7 (218-272)||(11085055-11085109)
chr7 (72-106)||(17232584-17232618)
chr7 (230-272)||(32434396-32434438)
chr7 (227-272)||(11066672-11066717)
chr7 (215-272)||(11391917-11391974)
chr7 (67-132)||(15213749-15213814)
chr7 (207-272)||(15213755-15213820)
chr7 (207-272)||(36685981-36686046)
chr7 (207-272)||(37727658-37727723)
[»] chr2 (17 HSPs)
chr2 (12-187)||(24865452-24865627)
chr2 (67-187)||(22500984-22501104)
chr2 (67-187)||(22508918-22509038)
chr2 (190-272)||(6576430-6576513)
chr2 (12-187)||(7672240-7672409)
chr2 (218-272)||(24883657-24883711)
chr2 (67-110)||(6576446-6576489)
chr2 (191-272)||(24436247-24436328)
chr2 (68-110)||(24436263-24436305)
chr2 (72-110)||(24883673-24883711)
chr2 (207-256)||(24865501-24865550)
chr2 (11-122)||(2524410-2524521)
chr2 (207-253)||(7672289-7672335)
chr2 (207-256)||(22501061-22501110)
chr2 (207-256)||(22508995-22509044)
chr2 (227-272)||(24781643-24781688)
chr2 (81-110)||(24781643-24781672)
[»] chr8 (22 HSPs)
chr8 (11-187)||(21579887-21580063)
chr8 (11-187)||(29763549-29763724)
chr8 (27-165)||(39833889-39834029)
chr8 (207-272)||(18760591-18760656)
chr8 (204-272)||(27472406-27472474)
chr8 (204-272)||(38550101-38550169)
chr8 (67-187)||(41680859-41680979)
chr8 (186-272)||(1327117-1327203)
chr8 (11-110)||(18760607-18760706)
chr8 (67-162)||(32807285-32807380)
chr8 (207-272)||(29763599-29763664)
chr8 (207-269)||(21579937-21579999)
chr8 (72-110)||(27472420-27472458)
chr8 (72-110)||(38550115-38550153)
chr8 (190-262)||(3273206-3273278)
chr8 (227-272)||(19139969-19140014)
chr8 (207-272)||(32807321-32807386)
chr8 (227-272)||(39936813-39936858)
chr8 (72-110)||(1327149-1327187)
chr8 (68-110)||(3273212-3273254)
chr8 (11-132)||(42560208-42560329)
chr8 (207-272)||(42560258-42560323)
[»] scaffold1137 (1 HSPs)
scaffold1137 (91-193)||(2299-2401)
[»] scaffold0071 (1 HSPs)
scaffold0071 (11-187)||(14335-14511)
[»] scaffold1351 (2 HSPs)
scaffold1351 (67-187)||(1561-1681)
scaffold1351 (207-256)||(1638-1687)
[»] scaffold0100 (2 HSPs)
scaffold0100 (186-272)||(36140-36226)
scaffold0100 (72-110)||(36172-36210)
[»] scaffold0815 (1 HSPs)
scaffold0815 (67-187)||(479-599)
[»] scaffold0810 (3 HSPs)
scaffold0810 (204-272)||(2988-3056)
scaffold0810 (72-110)||(3004-3042)
scaffold0810 (11-59)||(3088-3136)
[»] scaffold0737 (2 HSPs)
scaffold0737 (67-187)||(6415-6535)
scaffold0737 (207-272)||(6409-6474)
[»] scaffold0434 (1 HSPs)
scaffold0434 (207-272)||(6790-6855)
[»] scaffold0075 (1 HSPs)
scaffold0075 (159-272)||(8350-8462)
[»] scaffold0004 (2 HSPs)
scaffold0004 (187-272)||(362948-363033)
scaffold0004 (72-110)||(362964-363002)
[»] scaffold0395 (2 HSPs)
scaffold0395 (67-187)||(10890-11010)
scaffold0395 (207-272)||(10951-11016)
[»] scaffold0802 (2 HSPs)
scaffold0802 (190-272)||(5470-5552)
scaffold0802 (68-115)||(5494-5541)
[»] scaffold0335 (2 HSPs)
scaffold0335 (190-272)||(861-943)
scaffold0335 (68-110)||(877-919)
[»] scaffold0080 (2 HSPs)
scaffold0080 (190-272)||(59319-59401)
scaffold0080 (68-111)||(59343-59386)
[»] scaffold0513 (2 HSPs)
scaffold0513 (186-272)||(10961-11047)
scaffold0513 (72-110)||(10993-11031)
[»] scaffold0371 (2 HSPs)
scaffold0371 (190-272)||(3120-3202)
scaffold0371 (11-110)||(3136-3234)
[»] scaffold0001 (2 HSPs)
scaffold0001 (218-272)||(76946-77000)
scaffold0001 (72-110)||(76962-77000)
[»] scaffold0384 (1 HSPs)
scaffold0384 (227-272)||(8189-8234)
[»] scaffold0134 (1 HSPs)
scaffold0134 (227-272)||(10029-10074)
[»] scaffold0124 (1 HSPs)
scaffold0124 (175-272)||(24726-24822)
[»] scaffold0599 (4 HSPs)
scaffold0599 (11-122)||(257-368)
scaffold0599 (11-122)||(4675-4786)
scaffold0599 (207-269)||(4674-4736)
scaffold0599 (208-269)||(256-317)
[»] scaffold0375 (1 HSPs)
scaffold0375 (228-272)||(9106-9150)
[»] scaffold0061 (4 HSPs)
scaffold0061 (24-106)||(15421-15503)
scaffold0061 (24-106)||(24479-24561)
scaffold0061 (189-252)||(15439-15503)
scaffold0061 (189-252)||(24497-24561)
[»] scaffold0679 (1 HSPs)
scaffold0679 (215-272)||(2468-2525)
[»] scaffold0509 (1 HSPs)
scaffold0509 (227-272)||(9561-9606)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 12269773 - 12269513
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaatgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  12269773 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgattaatg-aaaaagatttatatattgtgaaagttgttgatatgaagttgtatt 12269675  T
Q  111 ttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  12269674 ttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttgatgattaatg 12269575  T
Q  211 tgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||    
T  12269574 tgagaagatttataaattttgaaggacgttgatatgaagttgtaatgattatatttgatgat 12269513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 92 - 272
Target Start/End: Original strand, 18439845 - 18440025
Alignment:
Q  92 gttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatga 191  Q
    ||||||||| ||||| || | ||| ||||||||| |||||| | |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||    
T  18439845 gttgatatgtagttgcaaatgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatga 18439944  T
Q  192 tttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||  || || ||||||||||||| || |||| ||||||||||| | |||||||||||||||||| || |||||||||||    
T  18439945 tttactttgatgattaatgtgagaatatctatatattgtgaaagatgatgatatgaagttgtaatggttgtatttgatgat 18440025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 272
Target Start/End: Original strand, 20630147 - 20630275
Alignment:
Q  144 tgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgat 243  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||||||||  || |  ||||||||||||| ||||||| ||||||||||| ||||||    
T  20630147 tgttgtatatgtttaaatgatgttgtcttgctgttgtaatgaatatgatttactttgacgattaatgtgagaatatttatatattgtgaaagatgttgat 20630246  T
Q  244 atgaagttgtaatgattatatttgatgat 272  Q
    |||||||||||||| || |||| ||||||    
T  20630247 atgaagttgtaatggttgtattagatgat 20630275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 31224635 - 31224811
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||| ||||| |  |||||||| || ||  |||| ||||||||| ||||||||  ||||||||||||||||||    
T  31224635 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa 31224733  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| |||||| || |||||| | |||| ||||| || |||||||||||||||| || ||||||||||| ||||||    
T  31224734 ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 31224811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 31415519 - 31415399
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| ||||||||||||||||||  |||||||||||||||||||| ||| |||||| || |||||| | |||| ||||| || ||||||||||||||||     
T  31415519 aaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgt 31415420  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || ||||||||||| ||||||    
T  31415419 tgtcttgctgttgtgatgaat 31415399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 1988912 - 1989012
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| ||||||||||||||||||||| || | ||||||||| || ||  ||||||| |||||| ||||||||||||||||||||||||||||    
T  1988912 cagagaggatgattaagatgatttaatattgttgattcacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgaagttgtaa 1989011  T
Q  110 t 110  Q
    |    
T  1989012 t 1989012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 49969934 - 49970048
Alignment:
Q  159 aatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatg 257  Q
    ||||||| || ||| ||||||| ||||||||||||||  || || ||||| ||||| || ||||||| ||||||||||| ||||||||||||||||||||    
T  49969934 aatgatgttgtcttcctgttgtgatgaatatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaatg 49970033  T
Q  258 attatatttgatgat 272  Q
     ||||||||||||||    
T  49970034 gttatatttgatgat 49970048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 15447681 - 15447854
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||| || || |  |||||||| || ||  |||| ||| ||||| ||||||||  ||||||||||||||||||    
T  15447681 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaaatattcatataatgtgaaagacgttgatatgaagttgtaa 15447779  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| ||||||    |||||| | |||| ||||| || |||||||||||||||| || ||||||||||| ||||||    
T  15447780 ttgttatatatgat---tattattgatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 15447854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 49389740 - 49389833
Alignment:
Q  20 tgactaagatgatttaatattgttgtttaaagttgatga-tcaatgcaaaaagattt--atatattgtgaaagttgttgatatgaagttgtaatt 111  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||  |||| ||||  |||||||||| |||||||||||||||||||||||||    
T  49389740 tgactaagatgaattaatattgttgtttaaagttgatgattaaatgtgaaaatatttagatatattgtg-aagttgttgatatgaagttgtaatt 49389833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 1465416 - 1465520
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaata 188  Q
    |||||||||||||||||| |||| ||| | ||||||| |||||  | |||||||||| | ||||||||||||||||| || |||||||  || |||||||    
T  1465416 gttgttgatatgaagttgaaattgttatacatgaagattattaatgatggttacttgctctatatgtttaaatgatgttgtcttgctgccgtgatgaata 1465515  T
Q  189 tgatt 193  Q
    |||||    
T  1465516 tgatt 1465520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 49389636 - 49389740
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaata 188  Q
    ||||||| |||||||||| |||| ||| | |||||||  |||||   ||| ||||| |||||||||||||||||||| || |||||||| || |||||||    
T  49389636 gttgttggtatgaagttgaaattgttatacatgaagatcattattaatgggtacttattgtatatgtttaaatgatgttgtcttgctgtcgtgatgaata 49389735  T
Q  189 tgatt 193  Q
    |||||    
T  49389736 tgatt 49389740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 40812100 - 40812058
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  40812100 aaagatttatatattgtgaaagatgttgatatgaagttgtaat 40812058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 22307386 - 22307431
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||    
T  22307386 ttgtgaaagatgttgatatgaagttgtaatgattatattggatgat 22307431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 31415525 - 31415460
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||  |||||| |||||||    
T  31415525 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgat 31415460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 40812099 - 40812050
Alignment:
Q  215 aagatttataaattgtgaaagaagttgatatgaagttgtaatgattatat 264  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  40812099 aagatttatatattgtgaaagatgttgatatgaagttgtaatggttatat 40812050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 49969989 - 49970032
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  49969989 aaaatatttatatattgtgaaagatgttgatatgaagttgtaat 49970032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 20630221 - 20630259
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  20630221 atttatatattgtgaaagatgttgatatgaagttgtaat 20630259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 1988963 - 1989028
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||| |||| | ||||||||  |||||||||||||||||||| || |||||||||||    
T  1988963 aatgtgaaaagatctatataatgtgaaagttgttgatatgaagttgtaatggttgtatttgatgat 1989028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 5842042 - 5841985
Alignment:
Q  215 aagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| ||||||||||| | | ||| |||||||||||| ||||||||||||||    
T  5842042 aagatttatatattgtgaaagatgctcataagaagttgtaatggttatatttgatgat 5841985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 17538356 - 17538311
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||    
T  17538356 ttgtgaaagatgttgatatgaagttgtattgattatattggatgat 17538311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 23413322 - 23413417
Alignment:
Q  175 tgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||| ||||||||||||||  || || ||||||| ||||| ||| | | |||||||| || | ||||||||||||||||||||| |||||||||||    
T  23413322 tgttgtgatgaatatgatttac-ttgatgattaatgagagaatatt-acatattgtgaatgatgatgatatgaagttgtaatgattgtatttgatgat 23413417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 31224685 - 31224750
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| | ||||||||| |||||||||||||||||||  |||||| |||||||    
T  31224685 aatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaattgttatatatgatgat 31224750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 40807245 - 40807200
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  40807245 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 40807200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 11913092 - 11912981
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| |||| || || || |  |||||||| || ||  |||| ||||||||||||||||||  ||||||||||| ||||||    
T  11913092 cagagaggatgaataagatgatt-aataatgatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa 11912994  T
Q  110 tttttacatatga 122  Q
    || ||| ||||||    
T  11912993 ttgttatatatga 11912981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 11913042 - 11912980
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgat 269  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| ||||    
T  11913042 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgat 11912980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 30175308 - 30175346
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  30175308 atttatatactgtgaaagatgttgatatgaagttgtaat 30175346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 6808252 - 6808199
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatat 120  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| ||||    
T  6808252 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatat 6808199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 6808258 - 6808209
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||    
T  6808258 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 6808209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 46643038 - 46642777
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaatgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  46643038 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgattaatgcgaaaagatttatatattgtgaaagttgttaatatgaagttgtaat 46642939  T
Q  111 ttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaatg 210  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||||    
T  46642938 tgttacatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtgatgaatatgatttaatttgatgattaatg 46642839  T
Q  211 tgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  46642838 tgagaagatttataaactgtgaaagacgttgatatgaagttgtaatggttatatttgatgat 46642777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 13844744 - 13844485
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| ||||||||||||||||| ||| || | ||||||||| || ||  |||| || |||||| ||||||||||||||||||| ||||| ||    
T  13844744 cagagaggatgattaagatgatttaatattattgatttacgttgatgattaaatgtgaaaatatctatataatgtgaaagttgttgatatggagttgcaa 13844645  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaat 209  Q
     | ||| ||||||||| |||||| | |||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||  || |||||||||    
T  13844644 atgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtcttactgttgtgatgaatatgatttactttgattattaat 13844545  T
Q  210 gtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgat 269  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||| || ||||||||    
T  13844544 gtgagaatatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgat 13844485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 33186273 - 33186097
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||  || || |  |||||||| || ||  |||| ||||||||||| ||||||  ||||||||||||||||||    
T  33186273 cagagaggatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaaatatttatatattatgaaagacgttgatatgaagttgtaa 33186175  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| |||||| || |||||| | |||| ||||| || || ||||||||||||| || |||| |||||| ||||||    
T  33186174 ttgttatatatgatgattattattgatggtgacttgctgcatttgtttaaatgatgatgtcttgttgttgtgatgaat 33186097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 52873249 - 52873335
Alignment:
Q  186 atatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||  || || ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||| ||||||    
T  52873249 atatgatttactttgatgattaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgat 52873335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 15099464 - 15099360
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaata 188  Q
    |||||||||||||||||| |||| ||| | || |||| |||||  | |||||||||| |||||||||||||| |||| || |||||||| || |||||||    
T  15099464 gttgttgatatgaagttgaaattgttatacataaagattattaatgatggttacttgctgtatatgtttaaaagatgttgtcttgctgtcgtaatgaata 15099365  T
Q  189 tgatt 193  Q
    |||||    
T  15099364 tgatt 15099360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 9923435 - 9923353
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || ||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  9923435 gatttaagttgatgattaaatgtga-aagatttatatattgtgaaagatgttgatatgaagttgtaatggttatattggatgat 9923353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 11479424 - 11479506
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || ||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  11479424 gatttaagttgatgattaaatgtga-aagatttatatattgtgaaagatgttgatatgaagttgtaatggttatattggatgat 11479506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 35812203 - 35812285
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || ||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  35812203 gatttaagttgatgattaaatgtg-gaagatttatatattgtgaaagatgttgatatgaagttgtaatggttatattggatgat 35812285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 15868781 - 15868877
Alignment:
Q  175 tgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||| ||||||||||||||  || || ||||||| ||||| ||| ||| |||||||| || | ||||||||||||||||||||||||| |||||||    
T  15868781 tgttgtgatgaatatgatttactttgatgattaatgagagaatatt-atatattgtgaatgatgatgatatgaagttgtaatgattatatctgatgat 15868877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 362257 - 362189
Alignment:
Q  204 attaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||| || |||| ||||||    
T  362257 attaatgtgagaatatttatatattgtgaaagacgttgatatgaagttataatggttgtattagatgat 362189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 9923411 - 9923369
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  9923411 aaagatttatatattgtgaaagatgttgatatgaagttgtaat 9923369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 11479448 - 11479490
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  11479448 aaagatttatatattgtgaaagatgttgatatgaagttgtaat 11479490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 35812228 - 35812269
Alignment:
Q  69 aagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  35812228 aagatttatatattgtgaaagatgttgatatgaagttgtaat 35812269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 15190431 - 15190360
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaa 160  Q
    |||||||||||||||||| |||| ||| | ||||||| |||||  | |||||||||| ||||||||||||||    
T  15190431 gttgttgatatgaagttgaaattgttatacatgaagattattaatgatggttacttgctgtatatgtttaaa 15190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 15880812 - 15880717
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| |||||| || |||||| | |||| ||||| |  |||||| ||||||    
T  15880812 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctacatatgtctaaatg 15880717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 52873281 - 52873319
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  52873281 atttatatattgtgaaagatgttgatatgaagttgtaat 52873319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 630846 - 630942
Alignment:
Q  175 tgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||| |||||||  |||||  || || ||||||| ||||| ||| ||| |||||||| || | ||||||||||||||||||||| |||||||||||    
T  630846 tgttgtgatgaatacaatttactttgatgattaatgagagaatatt-atatattgtgaatgatgatgatatgaagttgtaatgattgtatttgatgat 630942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 15880818 - 15880753
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  15880818 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 15880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 19609573 - 19609528
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  19609573 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 19609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 33186223 - 33186158
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||| ||||||| |||||||||||||||||||  |||||| |||||||    
T  33186223 aatgtgaaaatatttatatattatgaaagacgttgatatgaagttgtaattgttatatatgatgat 33186158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 43700 - 43962
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| ||||||||||||||||||||| || | ||||||||| || ||  ||||||| |||||| ||||||||||||||||||| ||||| ||    
T  43700 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatggagttgcaa 43799  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaat 209  Q
     | ||| ||||||||| |||||| | |||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||  || || ||||||    
T  43800 atgttatatatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgattaat 43899  T
Q  210 gtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||| || |||||||||||    
T  43900 gtgagaatatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgatgat 43962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 47620 - 47834
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| ||||||||||||||||||||| || | ||||||||| || ||  ||||||| |||||| ||||||||||||||||||| ||||| ||    
T  47620 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaa 47719  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaat 209  Q
     | ||| ||||||||| |||||| | |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||  || || ||||||    
T  47720 atgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgattaat 47819  T
Q  210 gtgagaagatttata 224  Q
    ||||||| |||||||    
T  47820 gtgagaatatttata 47834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 25956537 - 25956799
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| ||||||||||||||||||||| || | ||||||||| || ||  ||||||| |||||| ||||||||||||||||||| ||||| ||    
T  25956537 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatggagttgcaa 25956636  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaat 209  Q
     | ||| ||||||||| |||||| | |||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||  || || ||||||    
T  25956637 atgttatatatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgattaat 25956736  T
Q  210 gtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||| || |||||||||||    
T  25956737 gtgagaatatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgatgat 25956799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 27851373 - 27851111
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||||| ||||| || || |  |||||||| || ||  |||| ||||||||||||||||||  ||||||||||| ||||||    
T  27851373 cagagaggatgaataagatgattta-tattgatgatttaccttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa 27851275  T
Q  110 ttt-ttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaa 208  Q
    ||| ||| ||||||||| |||||| | |||||||||||||| ||||||||||||||| || |||| ||||||  |||||||||||||  || ||  ||||    
T  27851274 tttgttatatatgaagattattattgatggttacttgttgtgtatgtttaaatgatgttgtcttgttgttgtgctgaatatgatttactttgatgcttaa 27851175  T
Q  209 tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||| ||||||| ||||||||||| | ||||||||||||||| || || |||||||||||    
T  27851174 tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtattggttgtatttgatgat 27851111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 20734128 - 20734304
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| ||| |||||||| ||||| || || |  |||||||| || ||  |||| ||||||||||||||||||  ||||||||||| ||||||    
T  20734128 cagagaggatgaataaaatgattta-tattgatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa 20734226  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| |||||| || |||||| | |||| ||||| || ||||||||||||| || || ||||||||||| ||||||    
T  20734227 ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatggtgttgtcttgctgttgtgatgaat 20734304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 19399928 - 19399814
Alignment:
Q  159 aatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatg 257  Q
    ||||||| || ||| ||||||| ||||||||| ||||  || || ||||| ||||| || ||||||| ||||||||||| ||||||||||||||||||||    
T  19399928 aatgatgttgtcttactgttgtgatgaatatggtttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaatg 19399829  T
Q  258 attatatttgatgat 272  Q
     ||||||||||||||    
T  19399828 gttatatttgatgat 19399814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 18927962 - 18927880
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || ||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  18927962 gatttaagttgatgattaaatgtga-aagatttatatattgtgaaagatgttgatatgaagttgtaatggttatattggatgat 18927880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 31630637 - 31630705
Alignment:
Q  204 attaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||| || |||| ||||||    
T  31630637 attaatgtgagaatatttatatattgtgaaagatgttgatatgaagttataatggttgtattagatgat 31630705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 2201234 - 2201139
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| |||||| || |||||| | |||| ||||| || |||||| ||||||    
T  2201234 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtctaaatg 2201139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 22421082 - 22420987
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| |||||| || |||||| | | || |||||||| |||||| ||||||    
T  22421082 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatagtgacttgttgcatatgtctaaatg 22420987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 18927938 - 18927896
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  18927938 aaagatttatatattgtgaaagatgttgatatgaagttgtaat 18927896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 19399873 - 19399830
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  19399873 aaaatatttatatattgtgaaagatgttgatatgaagttgtaat 19399830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 18708749 - 18708704
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  18708749 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 18708704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 20734178 - 20734243
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  20734178 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 20734243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 22421088 - 22421023
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  22421088 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 22421023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 23151069 - 23151114
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  23151069 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 23151114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 27322221 - 27322266
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  27322221 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 27322266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 34297006 - 34297071
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattat 132  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| |||||| || ||||||    
T  34297006 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattat 34297071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 34297001 - 34297065
Alignment:
Q  208 atgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  34297001 atgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 34297065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 2201229 - 2201175
Alignment:
Q  218 atttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  2201229 atttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 2201175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 31630651 - 31630689
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  31630651 atttatatattgtgaaagatgttgatatgaagttataat 31630689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 28708735 - 28708678
Alignment:
Q  215 aagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| ||||||||||| | | ||| |||||||||||| ||||||| ||||||    
T  28708735 aagatttatatattgtgaaagatgctcataagaagttgtaatggttatattggatgat 28708678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 28194365 - 28194627
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||| ||||| || |||||||||||||||||| || | ||||||||| || ||  |||| || |||||| ||||||||||||||||||| ||||| ||    
T  28194365 cagagaagatgattaggatgatttaatattgttgatttacgttgatgattaaatgtgaaaaaatctatataatgtgaaagttgttgatatgtagttgcaa 28194464  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaat 209  Q
     | ||| ||||||||| |||||| | |||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||  || || ||||||    
T  28194465 atgttatatatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgattaat 28194564  T
Q  210 gtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||||||||||    
T  28194565 gtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtatttgatgat 28194627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 43697578 - 43697316
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||||| || ||  ||||||| |||||| ||||||||||||||||||| ||||| ||    
T  43697578 cagagaggatgattaagatgatttaatattgttgatttaagttgatgattaaatgtgaaaagatctatatagtgtgaaagttgttgatatggagttgcaa 43697479  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaat 209  Q
     | ||| ||||||||| |||||| | |||||||||| |||||||||||| ||||||||| ||||||||||| || |||||||||||  || || ||||||    
T  43697478 atgttatatatgaagattattattgttggttacttgctgtatatgtttatatgatgctgtcttgctgttgtgataaatatgatttactttgatgattaat 43697379  T
Q  210 gtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||  ||| ||| ||||||||||| | |||||||||||||||||| || |||||||||||    
T  43697378 gtgagattattgatatattgtgaaagatgctgatatgaagttgtaatggttttatttgatgat 43697316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 49261455 - 49261349
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaata 188  Q
    ||||||||||||||||||||||| ||| | ||||||| |||||| | |||||||||||| |||||||||||||||| ||| |||||||| || |||||||    
T  49261455 gttgttgatatgaagttgtaattgttatacatgaagattattattgatggttacttgttatatatgtttaaatgatactgtcttgctgtcgtgatgaata 49261356  T
Q  189 tgattta 195  Q
    |||||||    
T  49261355 tgattta 49261349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 20636964 - 20636859
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaata 188  Q
    |||||||| |||||||||||||| ||| | ||||| | |||||| | |||||||||| ||||||||||||||||||| || |||||||| || |||||||    
T  20636964 gttgttgacatgaagttgtaattgttatacatgaatattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgctgtcgtgatgaata 20636865  T
Q  189 tgattt 194  Q
    ||||||    
T  20636864 tgattt 20636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 35981693 - 35981797
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaata 188  Q
    |||||||||||||||||| |||| || || ||||||| || ||  | |||||||||||||||||||||||||||||| || |||||||| || |||||||    
T  35981693 gttgttgatatgaagttgaaattgttgcacatgaagattactaatgatggttacttgttgtatatgtttaaatgatgttgtcttgctgtcgtgatgaata 35981792  T
Q  189 tgatt 193  Q
    |||||    
T  35981793 tgatt 35981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 43543139 - 43543053
Alignment:
Q  186 atatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||  || || ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  43543139 atatgatttactttgatgattaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatgattgtattagatgat 43543053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 51274325 - 51274420
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| ||| ||| || || |||||| | |||| ||||| || |||||||||||||    
T  51274325 aaaatatttatatattgtgaaagatgttgatatgaagttgtaattgttatataagatgattattattgatggtgacttgatgcatatgtttaaatg 51274420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 48301125 - 48301083
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  48301125 aaagatttatatattgtgaaagatgttgatatgaagttgtaat 48301083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 46382667 - 46382733
Alignment:
Q  204 attaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||||| |||||||  |||||||||| |||||||||||||||||||| || |||| ||||||    
T  46382667 attaatgtgagaatatttata--ttgtgaaagatgttgatatgaagttgtaatggttttattagatgat 46382733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 12328592 - 12328670
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttg 145  Q
    |||| ||||||||||||||||||  |||||||||||| ||||||| ||| |||||| || |||||| | |||| |||||    
T  12328592 aaaatatttatatattgtgaaagacgttgatatgaagatgtaattgttatatatgatgattattattgatggtgacttg 12328670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 43543107 - 43543069
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  43543107 atttatatattgtgaaagatgttgatatgaagttgtaat 43543069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 48301124 - 48301082
Alignment:
Q  215 aagatttataaattgtgaaagaagttgatatgaagttgtaatg 257  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  48301124 aagatttatatattgtgaaagatgttgatatgaagttgtaatg 48301082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 51274319 - 51274368
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||    
T  51274319 aatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 51274368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 12328597 - 12328651
Alignment:
Q  218 atttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||||||| |||||||||||| ||||||  |||||| |||||||    
T  12328597 atttatatattgtgaaagacgttgatatgaagatgtaattgttatatatgatgat 12328651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 8885518 - 8885469
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||    
T  8885518 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 8885469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 46382684 - 46382717
Alignment:
Q  77 tatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||||| ||||||||||||||||||||    
T  46382684 tatattgtgaaagatgttgatatgaagttgtaat 46382717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 51326953 - 51326904
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaatttttacatatg 121  Q
    ||||||||||| ||||||  |||||||||||||||||||| ||| |||||    
T  51326953 atttatatattatgaaagacgttgatatgaagttgtaattgttatatatg 51326904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 8885512 - 8885468
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatt 111  Q
    |||| ||||||||||||||||||  ||||||||||| ||||||||    
T  8885512 aaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 8885468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 5889092 - 5889353
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| || |||||||||||||||||| || | ||||||||| || ||  ||||||| |||||| ||||||||||||||||||| ||||| ||    
T  5889092 cagagaggatgattatgatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaa 5889191  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaat 209  Q
    || ||| | ||||||| |||||| | |||||||||| ||||||||||||||||||| || ||| |||| || ||||||||||||||  || || ||||||    
T  5889192 ttgttatacatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtctt-ctgtcgtgatgaatatgatttactttgatgattaat 5889290  T
Q  210 gtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||| || |||||||||||    
T  5889291 gtgagaatatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgatgat 5889353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 21555060 - 21555236
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||| ||||| |  |||||||| || ||  |||| ||||||||||||||||||  ||||| || |||||||||    
T  21555060 cagagaggatgaataagatgatt-aatattgatgttttagtttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgacataaagttgtaa 21555158  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| |||||| || |||||| | |||| ||||| || |||||||||||||||| || ||||||||||| ||||||    
T  21555159 ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 21555236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 21557726 - 21557902
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||| ||||| |  |||||||| || ||  |||| ||||||||||||||||||  ||||||||||||||||||    
T  21557726 cagagaggatgaataagatgatt-aatattgatgttttagtttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa 21557824  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| |||||| || |||||| | | || ||||| || |||||||||||||||| || ||||||||| | ||||||    
T  21557825 ttgttatatatgatgattattattgatagtgacttgctgcatatgtttaaatgatgttgtcttgctgttatgatgaat 21557902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 12122202 - 12122378
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||  || || |  |||||||| || ||  |||| ||||||||||||||||||  ||||||||||||||||||    
T  12122202 cagagaggatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa 12122300  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| |||||| || |||||| | |||| |||||  | |||||||||||||||| || ||||||||||| ||||||    
T  12122301 ttgttatatatgatgattattattgatggtgacttgcggcatatgtttaaatgatgatgtcttgctgttgtgatgaat 12122378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 29915150 - 29915251
Alignment:
Q  171 ttgctgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatg 270  Q
    |||||||||| ||||||||||| ||  || || ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||| ||||    
T  29915150 ttgctgttgtgatgaatatgatctactttgatgattaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatg 29915249  T
Q  271 at 272  Q
    ||    
T  29915250 at 29915251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 21871627 - 21871739
Alignment:
Q  159 aatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatga 258  Q
    |||||||||| |||| |||||| ||||||||||||||  || |  ||||||| ||||| ||| ||| |||||||| || | |||||||||||||||||||    
T  21871627 aatgatgctgtcttgttgttgtgatgaatatgatttactttgacgattaatgagagaatatt-atatattgtgaatgatgatgatatgaagttgtaatga 21871725  T
Q  259 ttatatttgatgat 272  Q
    || |||||||||||    
T  21871726 ttgtatttgatgat 21871739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 21875907 - 21876019
Alignment:
Q  159 aatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatga 258  Q
    |||||||||| |||| |||||| ||||||||||||||  || |  ||||||| ||||| ||| ||| |||||||| || | |||||||||||||||||||    
T  21875907 aatgatgctgtcttgttgttgtgatgaatatgatttactttgacgattaatgagagaatatt-atatattgtgaatgatgatgatatgaagttgtaatga 21876005  T
Q  259 ttatatttgatgat 272  Q
    || |||||||||||    
T  21876006 ttgtatttgatgat 21876019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 21741538 - 21741642
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaata 188  Q
    |||||||||| ||||||  |||| ||| | ||||||| |||||  | |||||||||||||||||||||||||||||| || |||||||| || ||| |||    
T  21741538 gttgttgataagaagtttaaattgttatacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgttgtcttgctgtcgtgatgtata 21741637  T
Q  189 tgatt 193  Q
    |||||    
T  21741638 tgatt 21741642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 31455862 - 31455686
Alignment:
Q  13 gagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaatt 111  Q
    |||||||||| |||||||||| ||||||| ||||| |  |||||||| || ||  |||| |||||||||||||||||   |||||||||||||||||||     
T  31455862 gagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatatgaagttgtaatc 31455764  T
Q  112 tttacatatga---agaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaa 186  Q
     ||| | ||||    || |||||| | |||| ||||| || |||||||||||||||| || ||||||||||| |||||    
T  31455763 gttataaatgatattgattattattgatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaa 31455686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 24212483 - 24212385
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatg 165  Q
    |||| ||||||||||||||||||  |||||||||||||||||||| ||| |||||| || || ||| | |||| ||||| || |||||| |||||||||    
T  24212483 aaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattaatattgatggtgacttgctgcatatgtctaaatgatg 24212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 31455249 - 31455073
Alignment:
Q  13 gagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaatt 111  Q
    |||||||||| |||||||||| ||||||| ||||| |  |||||||| || ||  |||| |||||||||||||||||   |||||||| ||||||||||     
T  31455249 gagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatattaagttgtaatc 31455151  T
Q  112 tttacatatga---agaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaa 186  Q
     ||| | ||||    || |||||| | |||| ||||| || |||||||||||||||| || ||||||||||| |||||    
T  31455150 gttataaatgatattgattattattgatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaa 31455073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 12122252 - 12122317
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||  |||||| |||||||    
T  12122252 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgat 12122317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 21557776 - 21557841
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||  |||||| |||||||    
T  21557776 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgat 21557841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 24212489 - 24212424
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||  |||||| |||||||    
T  24212489 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgat 24212424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 30615864 - 30615759
Alignment:
Q  74 ttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttg 173  Q
    ||||||||||||||||  |||||||||||||||||||| ||| |  ||| || |||||  | |||| ||||| || ||||||||||| |||| || ||||    
T  30615864 ttatatattgtgaaagacgttgatatgaagttgtaattgttataattgatgattattaatgatggtgacttgctgcatatgtttaaacgatgatgtcttg 30615765  T
Q  174 ctgttg 179  Q
    ||||||    
T  30615764 ctgttg 30615759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 29915197 - 29915235
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  29915197 atttatatattgtgaaagatgttgatatgaagttgtaat 29915235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 36460285 - 36460220
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattat 132  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| |||||| || ||||||    
T  36460285 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattat 36460220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 36460291 - 36460226
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  36460291 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 36460226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 17875304 - 17875216
Alignment:
Q  92 gttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgt 180  Q
    |||||||||||||| ||||| ||| |||||| || |||||| | |||| ||||| || |||||||||||||||  |  |||||||||||    
T  17875304 gttgatatgaagttctaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatattatcttgctgttgt 17875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 30615864 - 30615812
Alignment:
Q  220 ttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||| ||||||||||| |||||||||||||||||||  ||||| ||||||||    
T  30615864 ttatatattgtgaaagacgttgatatgaagttgtaattgttataattgatgat 30615812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 35852738 - 35852643
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| ||| || || |||||| | ||||  |||| || |||||| ||||||    
T  35852738 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatacgatgattattattgatggtggcttgctgcatatgtctaaatg 35852643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 21555110 - 21555175
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||| || ||||||||||  |||||| |||||||    
T  21555110 aatgtgaaaatatttatatattgtgaaagacgttgacataaagttgtaattgttatatatgatgat 21555175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 31455814 - 31455765
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| ||||||||| | |||||||||||||||||||    
T  31455814 aatgtgaaaatatttatatattgtgaaaaacgttgatatgaagttgtaat 31455765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 35852744 - 35852695
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||    
T  35852744 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 35852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 87 - 272
Target Start/End: Complemental strand, 85376 - 85191
Alignment:
Q  87 aagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaa 186  Q
    |||||||||||||| ||||| || | ||| ||||||||| |||||| | |||||||||| ||||||||||||||||| | || ||||||||||| |||||    
T  85376 aagttgttgatatggagttgcaaatgttatatatgaagattattattgatggttacttgatgtatatgtttaaatgaagttgtcttgctgttgtgatgaa 85277  T
Q  187 tatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||  || || ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||  || |||||||||||    
T  85276 tatgatttactttgatgattaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatagttgtatttgatgat 85191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 85245 - 85207
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  85245 atttatatattgtgaaagatgttgatatgaagttgtaat 85207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 87 - 272
Target Start/End: Complemental strand, 17232749 - 17232564
Alignment:
Q  87 aagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaa 186  Q
    |||||||||||||| ||||| || | ||||||||||||| |||||  | |||||||||||||||||||||||||||||| || | ||||||||| |||||    
T  17232749 aagttgttgatatggagttgcaaatgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgatgatgtcatgctgttgtgatgaa 17232650  T
Q  187 tatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||  || || ||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||| || |||| ||||||    
T  17232649 tatgatttactttgatgattaatgtgagaatatttatatattgtgaaagatgttgatatgaagttggaatggttgtattagatgat 17232564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 272
Target Start/End: Complemental strand, 8468548 - 8468370
Alignment:
Q  87 aagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaa 186  Q
    |||||||||||||| ||||| |  | ||||||||||||| |||||  | |||||||||||||||||||||||||||||       ||||||||| |||||    
T  8468548 aagttgttgatatggagttgcagatgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgat-------tgctgttgtgatgaa 8468456  T
Q  187 tatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||  || || |||||||||| || ||||||| ||||||||||| |||||||||||||||||||| || |||| ||||||    
T  8468455 tatgatttactttgatgattaatgtgataatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgat 8468370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 15439457 - 15439318
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||| || ||  ||||||| ||||   ||||||||||||||||||||||||||||    
T  15439457 cagagaggatgactaagatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatactatgtgaaagttgttgatatgaagttgtaa 15439358  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgt 149  Q
    || ||| ||||||||| |||||| | ||||||||||||||    
T  15439357 ttgttatatatgaagattattattgatggttacttgttgt 15439318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 30820937 - 30821113
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||| ||||| |  |||||||| || ||  |||| |||||||||||||||||   ||||||||||||||||||    
T  30820937 cagagaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaaatatttatatattgtgaaatacgttgatatgaagttgtaa 30821035  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| |||||| || |||||| | |||| ||||| || |||||||||||||||| || |||| |||||| ||||||    
T  30821036 ttgttatatatgatgattattattgatggtaacttgctgcatatgtttaaatgatgttgtcttgttgttgtgatgaat 30821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 36685934 - 36686107
Alignment:
Q  14 agaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaattt 112  Q
    ||||||||| |||||||||| ||||||| ||||| |  |||||||| || ||  |||| ||||||||||||||||||  | |||||||||||| |||||     
T  36685934 agaggatgaataagatgatt-aatattgatgttttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgctgatatgaagttttaattg 36686032  T
Q  113 ttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    ||| |||||| || |||||| | |||| ||||| || |||||||||||||||| || ||||||||||| ||||||    
T  36686033 ttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 36686107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 38480352 - 38480232
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| ||||||||||||||||||  |||||||||||||||||||| ||| |||||| || |||||| | |||| ||||| || |||| |||||||||||     
T  38480352 aaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgacttgctgcatatatttaaatgatgt 38480253  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || ||||||||||| ||||||    
T  38480252 tgtcttgctgttgtgatgaat 38480232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 37727607 - 37727707
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatga-tcaatgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| ||||||||||||||||||||| || | |||||||| | ||||  ||||||| |||||| |||||||||||| |||||||||||||||    
T  37727607 cagagaggatgattaagatgatttaatattgttgctttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgtagatatgaagttgtaa 37727706  T
Q  110 t 110  Q
    |    
T  37727707 t 37727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 9389702 - 9389806
Alignment:
Q  89 gttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaata 188  Q
    |||||||||||||||||| ||||  || | ||||||| |||||  | |||||||||| ||||||||||||||||||| || |||||||| || |||||||    
T  9389702 gttgttgatatgaagttgaaattgatatacatgaagattattaatgatggttacttgctgtatatgtttaaatgatgttgtcttgctgtcgtgatgaata 9389801  T
Q  189 tgatt 193  Q
    |||||    
T  9389802 tgatt 9389806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 11092852 - 11092757
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    |||| |||||||||||||||||| |||||||||||| |||||||| ||| |||||| || |||||| | |||| |||||||| ||| |||||||||    
T  11092852 aaaatatttatatattgtgaaagatgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgttgcatacgtttaaatg 11092757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 14270136 - 14270222
Alignment:
Q  186 atatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||  || || ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||| ||||||    
T  14270136 atatgatttactttgatgattaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgat 14270222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 45847750 - 45847818
Alignment:
Q  204 attaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||| ||||||    
T  45847750 attaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgat 45847818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 9320466 - 9320561
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| |||||| || |||||| | |||| |||||||| |||||| ||||||    
T  9320466 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgttgcatatgtctaaatg 9320561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 18302207 - 18302111
Alignment:
Q  175 tgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||| ||||||||||||||  || || |||| || ||||| ||| ||| |||||| | |||| ||||||||||||||||||||| |||||||||||    
T  18302207 tgttgtgatgaatatgatttactttgatgattattgagagaatatt-atatattgtggatgaagatgatatgaagttgtaatgattgtatttgatgat 18302111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 38480358 - 38480293
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||  |||||| |||||||    
T  38480358 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgat 38480293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 11085170 - 11085019
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||| || || |  |||||||| || ||  |||  ||||||||||||||||||  ||||||||||| ||||||    
T  11085170 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaactatttatatattgtgaaagacgttgatatgaaattgtaa 11085072  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    || ||| |||||| || |||||| | |||| ||||| || ||| | |||||||    
T  11085071 ttgttatatatgatgattattattgatggtgacttgctgcatacgattaaatg 11085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 8468424 - 8468386
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  8468424 atttatatattgtgaaagatgttgatatgaagttgtaat 8468386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 14270168 - 14270206
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14270168 atttatatattgtgaaagatgttgatatgaagttgtaat 14270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 45847764 - 45847802
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  45847764 atttatatattgtgaaagatgttgatatgaagttgtaat 45847802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 9320460 - 9320525
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  9320460 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 9320525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 11092858 - 11092793
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  11092858 aatgtgaaaatatttatatattgtgaaagatgttgatatgaaattgtaattgttatatatgatgat 11092793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 12371527 - 12371482
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  12371527 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 12371482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 13148275 - 13148320
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  13148275 ttgtgaaagatgttgatatgaagttgtaatggttatattagatgat 13148320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 30820987 - 30821052
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||| | |||||||||||||||||||  |||||| |||||||    
T  30820987 aatgtgaaaatatttatatattgtgaaatacgttgatatgaagttgtaattgttatatatgatgat 30821052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 8851948 - 8852005
Alignment:
Q  206 taatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatat 264  Q
    |||||||| |||||||||| |||||||||||  ||||||| ||||||||||| ||||||    
T  8851948 taatgtga-aagatttatatattgtgaaagattttgatataaagttgtaatggttatat 8852005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 8851955 - 8851997
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  8851955 aaagatttatatattgtgaaagattttgatataaagttgtaat 8851997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 11085109 - 11085055
Alignment:
Q  218 atttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  11085109 atttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 11085055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 17232618 - 17232584
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttg 106  Q
    |||||||||||||||||| ||||||||||||||||    
T  17232618 atttatatattgtgaaagatgttgatatgaagttg 17232584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 32434396 - 32434438
Alignment:
Q  230 tgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||    
T  32434396 tgaaagatgttgatatgaagttgtaatggttatattggatgat 32434438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 11066717 - 11066672
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||  ||||||| ||||||    
T  11066717 ttgtgaaagatgttgatatgaagttgtaatagttatattggatgat 11066672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 11391917 - 11391974
Alignment:
Q  215 aagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| ||||||||||| | | ||| |||||||||||| ||||||| ||||||    
T  11391917 aagatttatatattgtgaaagatgctcataagaagttgtaatggttatattggatgat 11391974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 15213814 - 15213749
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattat 132  Q
    |||| ||||||||||||||||||   |||||||||| |||||||| ||| |||||| || ||||||    
T  15213814 aaaatatttatatattgtgaaagacattgatatgaaattgtaattgttatatatgatgattattat 15213749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 15213820 - 15213755
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| |||||||||||  |||||||||| |||||||  |||||| |||||||    
T  15213820 aatgtgaaaatatttatatattgtgaaagacattgatatgaaattgtaattgttatatatgatgat 15213755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 36685981 - 36686046
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| | |||||||||||| ||||  |||||| |||||||    
T  36685981 aatgtgaaaatatttatatattgtgaaagacgctgatatgaagttttaattgttatatatgatgat 36686046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 37727658 - 37727723
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||| |||| | ||||||||  || ||||||||||||||||| || |||||||||||    
T  37727658 aatgtgaaaagatctatataatgtgaaagttgtagatatgaagttgtaatggttgtatttgatgat 37727723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 24865452 - 24865627
Alignment:
Q  12 agagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||| |||||||||| ||||||| || || |  |||||||| || ||  |||| |||||||||||||||||| ||||||||||||||||||||    
T  24865452 agagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 24865550  T
Q  111 ttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    | ||| ||| || || |||||| | |||| ||||| || |||||||||||||||| || |||||| |||| ||||||    
T  24865551 tgttatataagatgattattattgatggtgacttgatgcatatgtttaaatgatgttgtcttgctattgtgatgaat 24865627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 22501104 - 22500984
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| ||||||||| ||||||||  |||||||||||||||||||| ||| ||| || || || ||| | |||| ||||| || |||||||||||||||||    
T  22501104 aaaatatttatataatgtgaaagacgttgatatgaagttgtaattgttatataagatgattaatattgatggtaacttgctgcatatgtttaaatgatgc 22501005  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || |||||| |||| ||||||    
T  22501004 tgtcttgctattgtgatgaat 22500984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 22509038 - 22508918
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| ||||||||| ||||||||  |||||||||||||||||||| ||| ||| || || || ||| | |||| ||||| || |||||||||||||||||    
T  22509038 aaaatatttatataatgtgaaagacgttgatatgaagttgtaattgttatataagatgattaatattgatggtaacttgctgcatatgtttaaatgatgc 22508939  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || |||||| |||| ||||||    
T  22508938 tgtcttgctattgtgatgaat 22508918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 6576513 - 6576430
Alignment:
Q  190 gatttaagttcattattaat-gtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || |||||  |||| || ||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  6576513 gatttaagttgatgattaaaagtgaaaaaatttatatattgtgaaagatgttgatatgaagttgtaatggttatatttgatgat 6576430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 7672240 - 7672409
Alignment:
Q  12 agagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||| |||||||||| ||||||| || || |  |||||||| || ||  |||| ||||||||||||||||||  |||||||||||||||        
T  7672240 agagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttg---- 7672334  T
Q  111 ttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
      ||| ||| || || |||||| | |||| ||||| || ||| ||||||||||||||| ||||||||||| ||||||    
T  7672335 --ttatataagatgattattattgatggtgacttgatgcatacgtttaaatgatgctgtcttgctgttgtgatgaat 7672409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 24883711 - 24883657
Alignment:
Q  218 atttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  24883711 atttatatattgtgaaagatgttgatatgaagttgtaatggttatattggatgat 24883657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 6576489 - 6576446
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  6576489 aaaaaatttatatattgtgaaagatgttgatatgaagttgtaat 6576446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 24436328 - 24436247
Alignment:
Q  191 atttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||| || ||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||| ||| ||| ||||||    
T  24436328 atttaagttgatgattaaatgtga-aagatttatatattgtgaaagatgttgatatgaaattgtaatggttacattggatgat 24436247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 24436305 - 24436263
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  24436305 aaagatttatatattgtgaaagatgttgatatgaaattgtaat 24436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 24883711 - 24883673
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24883711 atttatatattgtgaaagatgttgatatgaagttgtaat 24883673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 24865501 - 24865550
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||    
T  24865501 aatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 24865550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 2524410 - 2524521
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    ||||||| |||| |||||||||| ||||||| || || |  |||||||| || ||  |||| ||||||||||||||||||  |||||||| || ||||||    
T  2524410 cagagagtatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatcaaattgtaa 2524508  T
Q  110 tttttacatatga 122  Q
    || ||||||||||    
T  2524509 ttgttacatatga 2524521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 7672289 - 7672335
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgt 253  Q
    ||||||| || ||||||| ||||||||||| ||||||||||||||||    
T  7672289 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgt 7672335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 22501110 - 22501061
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| | ||||||||| |||||||||||||||||||    
T  22501110 aatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaat 22501061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 22509044 - 22508995
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| | ||||||||| |||||||||||||||||||    
T  22509044 aatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaat 22508995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 24781643 - 24781688
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||||    
T  24781643 ttgtgaaagttgttgatatgaagttgtaatggttatattggatgat 24781688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 24781643 - 24781672
Alignment:
Q  81 ttgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||||||||||||||||||||||    
T  24781643 ttgtgaaagttgttgatatgaagttgtaat 24781672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 21579887 - 21580063
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||  || || |  |||||||| || ||  |||| ||||||||||||||||||  ||||||||||||||||||    
T  21579887 cagagaggatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa 21579985  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| ||||||  | |||||| | |||| ||||| || |||||||||||||||| || ||||||||||| ||||||    
T  21579986 ttgttatatatgataattattattgatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 21580063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 29763549 - 29763724
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||  || || |  |||||||| || ||  |||| ||||||||||||||||||  ||||||||||||||||||    
T  29763549 cagagaggatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa 29763647  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| |||||| || |||||||| |||| | ||| || |||||||||||||||| || ||||||||||| ||||||    
T  29763648 ttgttatatatgatgattattatcgatggtga-ttgctgcatatgtttaaatgatgatgtcttgctgttgtgatgaat 29763724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 39834029 - 39833889
Alignment:
Q  27 gatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaattt-ttacatatgaag 124  Q
    |||||||||||||||||| || | ||||||||| || ||  ||||||| ||||||  ||||| |||||||||||||||||| || |  ||| ||||||||    
T  39834029 gatgatttaatattgttgatttacgttgatgattaaatgtgaaaagatctatataacgtgaatgttgttgatatgaagttgcaaatggttatatatgaag 39833930  T
Q  125 aatattatcggtggttacttgttgtatatgtttaaatgatg 165  Q
    | |||||| | |||||||| | |||||||||||||||||||    
T  39833929 attattattgatggttactcgctgtatatgtttaaatgatg 39833889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 18760656 - 18760591
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  18760656 aatgtgaaaagatttatatattgtgaaagatgttgatatgaagttataatggttatatttgatgat 18760591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 27472406 - 27472474
Alignment:
Q  204 attaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||| ||||||    
T  27472406 attaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgat 27472474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 38550101 - 38550169
Alignment:
Q  204 attaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||| ||||||    
T  38550101 attaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgat 38550169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 41680859 - 41680979
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| |||||||||||||||||| | ||||||| || |||||||| ||| |||||| || |||||| | |||| ||||| || ||||||||||||| ||     
T  41680859 aaaatatttatatattgtgaaagatattgatatcaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatggtga 41680958  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || |||| |||||| ||||||    
T  41680959 tgtcttgttgttgtgatgaat 41680979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 1327117 - 1327203
Alignment:
Q  186 atatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||  || || ||||||||||||| ||||||| |||||||| || |||||||||||||||||||| || |||| ||||||    
T  1327117 atatgatttactttgatgattaatgtgagaatatttatatattgtgaacgatgttgatatgaagttgtaatggttgtattagatgat 1327203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 18760706 - 18760607
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    ||||||| |||| |||||||||| |||||||| | || |||| |||||| || ||  ||||||||||||||||||||||| ||||||||||||||| |||    
T  18760706 cagagagtatgaataagatgatt-aatattgtgggtttaagtagatgattaaatgtgaaaagatttatatattgtgaaagatgttgatatgaagttataa 18760608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 32807380 - 32807285
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatg 162  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| |||||| || |||||| | |||| ||||| || |||||| ||||||    
T  32807380 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtctaaatg 32807285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 29763599 - 29763664
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||  |||||| |||||||    
T  29763599 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgat 29763664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 21579937 - 21579999
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgat 269  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||  |||||| ||||    
T  21579937 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgat 21579999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 27472420 - 27472458
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  27472420 atttatatattgtgaaagatgttgatatgaagttgtaat 27472458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 38550115 - 38550153
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  38550115 atttatatattgtgaaagatgttgatatgaagttgtaat 38550153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 3273278 - 3273206
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattat 262  Q
    |||||||||| || ||||| ||||| |||||||||| ||||||||| | |||| ||||||||||||||||||||    
T  3273278 gatttaagttgatgattaaatgtga-aagatttatatattgtgaaaaatgttggtatgaagttgtaatgattat 3273206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 19140014 - 19139969
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  19140014 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 19139969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 32807386 - 32807321
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  32807386 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 32807321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 39936813 - 39936858
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  39936813 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 39936858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 1327149 - 1327187
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  1327149 atttatatattgtgaacgatgttgatatgaagttgtaat 1327187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 3273254 - 3273212
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||||||  ||||| ||||||||||||||    
T  3273254 aaagatttatatattgtgaaaaatgttggtatgaagttgtaat 3273212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 42560208 - 42560329
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| |||| || || || |  |||||||| || ||  |||| |||||||||||||||||   ||||||||||| ||||||    
T  42560208 cagagaggatgaataagatgatt-aataatgatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaatacgttgatatgaaattgtaa 42560306  T
Q  110 tttttacatatgaagaatattat 132  Q
    || ||| |||||| || ||||||    
T  42560307 ttgttatatatgatgattattat 42560329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 42560258 - 42560323
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||| | ||||||||||| |||||||  |||||| |||||||    
T  42560258 aatgtgaaaatatttatatattgtgaaatacgttgatatgaaattgtaattgttatatatgatgat 42560323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 2299 - 2401
Alignment:
Q  91 tgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaatatg 190  Q
    |||||||||||||||| |||| ||  | ||||||| |||||  | ||||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  2299 tgttgatatgaagttgaaattgttgtacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgctgtcttgctgtcgtgatgaatatg 2398  T
Q  191 att 193  Q
    |||    
T  2399 att 2401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 14511 - 14335
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| ||||||| || || |  |||||||| || ||  |||| ||| ||||| ||||||||  ||||||||||||||||||    
T  14511 cagagaggatgaataagatgatt-aatattgatgatttactttgatgattaaatgtgaaaatattcatataatgtgaaagacgttgatatgaagttgtaa 14413  T
Q  110 tttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgccttgctgttgtcatgaat 187  Q
    || ||| ||| || || |||||| | |||| ||||| || |||||||||||||||| || ||||||||||| ||||||    
T  14412 ttgttatataagatgattattattgatggtgacttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 14335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 1681 - 1561
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| ||||||||||||||||||  |||||||||||||||||||| ||| ||| || || |||||| | |||| ||||| || ||||||||||||||||     
T  1681 aaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatataagatgattattattgatggtgacttgatgcatatgtttaaatgatgt 1582  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || |||| |||||| ||||||    
T  1581 tgtcttgttgttgtgatgaat 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 1687 - 1638
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaat 256  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||    
T  1687 aatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaat 1638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 36140 - 36226
Alignment:
Q  186 atatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||  || || ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  36140 atatgatttactttgatgattaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttatattagatgat 36226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 36172 - 36210
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  36172 atttatatattgtgaaagatgttgatatgaagttgtaat 36210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 599 - 479
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| ||||||||||||||||||  ||||||||||| || ||||| ||| |||||| || |||||| | |||| ||||| || ||||||| ||||||||     
T  599 aaaatatttatatattgtgaaagacgttgatatgaaattataattgttatatatgatgattattattgatggtgacttgctgcatatgttaaaatgatgt 500  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || ||||||||||| ||||||    
T  499 tgtcttgctgttgtgatgaat 479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 3056 - 2988
Alignment:
Q  204 attaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||||||||||    
T  3056 attaatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtatttgatgat 2988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 3042 - 3004
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  3042 atttatatattgtgaaagatgttgatatgaagttgtaat 3004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 3136 - 3088
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgat 59  Q
    |||||||||||| ||||||||||||||||||||| || | |||||||||    
T  3136 cagagaggatgattaagatgatttaatattgttgatttacgttgatgat 3088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 6415 - 6535
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||| |||||| || |||||| | |||| ||||| || ||||||||||||| ||     
T  6415 aaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatggtgt 6514  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || |||||| |||| ||||||    
T  6515 tgtcttgctattgtgatgaat 6535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 6409 - 6474
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||||    
T  6409 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgat 6474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 6790 - 6855
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  6790 aatgtgaaaatatttatatattgtgaaagacgttgatatggagttgtaatgattatatttgatgat 6855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 8350 - 8462
Alignment:
Q  159 aatgatgctgccttgctgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatga 258  Q
    |||||||||| |||| ||| || ||||||||||||||  || || ||||||| ||||| ||| ||| |||||||| || | |||||||||||||||||||    
T  8350 aatgatgctgtcttgttgtcgtgatgaatatgatttactttgatgattaatgagagaatatt-atatattgtgaatgatgatgatatgaagttgtaatga 8448  T
Q  259 ttatatttgatgat 272  Q
    || |||||||||||    
T  8449 ttgtatttgatgat 8462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 363033 - 362948
Alignment:
Q  187 tatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||  || || ||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||| |||| ||||||    
T  363033 tatgatttactttgatgattaatgtgagaatatttatatattttgaaagatgttgatatgaagttgtaatgattgtattagatgat 362948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 363002 - 362964
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  363002 atttatatattttgaaagatgttgatatgaagttgtaat 362964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 11010 - 10890
Alignment:
Q  67 aaaagatttatatattgtgaaagttgttgatatgaagttgtaatttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 166  Q
    |||| ||||||||||||||||||  ||||||||||| || ||||| ||| |||||| || |||||| | | || ||||| || ||||||||||||||||     
T  11010 aaaatatttatatattgtgaaagacgttgatatgaatttttaattgttatatatgatgattattattgattgtgacttgctgcatatgtttaaatgatgt 10911  T
Q  167 tgccttgctgttgtcatgaat 187  Q
    || ||||||||| | ||||||    
T  10910 tgtcttgctgttttgatgaat 10890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 11016 - 10951
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| || ||||  |||||| |||||||    
T  11016 aatgtgaaaatatttatatattgtgaaagacgttgatatgaatttttaattgttatatatgatgat 10951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 5470 - 5552
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || ||||| ||||| |||||||||| ||||||||||  |||||||||||||||||||| ||||||| ||||||    
T  5470 gatttaagttgatgattaaatgtga-aagatttatatattgtgaaaggtgttgatatgaagttgtaatgtttatattggatgat 5552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 5494 - 5541
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaattttta 115  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  5494 aaagatttatatattgtgaaaggtgttgatatgaagttgtaatgttta 5541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 943 - 861
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || ||||| ||||| |||||| ||| ||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  943 gatttaagttgatgattaaatgtga-aagattaatatattgtgaaagatgttgatatgaagttgtaatggttatattggatgat 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 919 - 877
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  919 aaagattaatatattgtgaaagatgttgatatgaagttgtaat 877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 59319 - 59401
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || ||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||  ||||||| ||||||    
T  59319 gatttaagttgatgattaaatgtga-aagatttatatattgtgaaagatgttgatatgaagttgtaattgttatattggatgat 59401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 59343 - 59386
Alignment:
Q  68 aaagatttatatattgtgaaagttgttgatatgaagttgtaatt 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  59343 aaagatttatatattgtgaaagatgttgatatgaagttgtaatt 59386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 10961 - 11047
Alignment:
Q  186 atatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||||  || || ||| ||||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||| ||||||    
T  10961 atatgatttactttgatgatttatgtgagaatatttatatattgtaaaagatgttgatatgaagttgtaatggttgtattagatgat 11047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 10993 - 11031
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  10993 atttatatattgtaaaagatgttgatatgaagttgtaat 11031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 3202 - 3120
Alignment:
Q  190 gatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| || ||||| ||||| |||||||||| || |||||| | |||||||||||||||||||| ||||||| ||||||    
T  3202 gatttaagttgatgattaaatgtga-aagatttatatatcgtgaaaaatgttgatatgaagttgtaatggttatattggatgat 3120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 3234 - 3136
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaatgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    ||||||| |||| |||||||||| ||| |||| | || ||||||||||| ||     |||||||||||||| ||||||  ||||||||||||||||||||    
T  3234 cagagagtatgaataagatgatt-aatgttgtggatttaagttgatgattaaatgtgaaagatttatatatcgtgaaaaatgttgatatgaagttgtaat 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 77000 - 76946
Alignment:
Q  218 atttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||| ||||||||||| || ||||||||||||||||| ||||||| ||||||    
T  77000 atttatatattgtgaaagatgtggatatgaagttgtaatggttatattggatgat 76946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 77000 - 76962
Alignment:
Q  72 atttatatattgtgaaagttgttgatatgaagttgtaat 110  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  77000 atttatatattgtgaaagatgtggatatgaagttgtaat 76962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 8189 - 8234
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  8189 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 8234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 10029 - 10074
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  10029 ttgtgaaagatgttgatatgaagttgtaatggttatattggatgat 10074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 24726 - 24822
Alignment:
Q  175 tgttgtcatgaatatgatttaagttcattattaatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||| ||||||||||||||  || || |||| || ||||| ||| ||| |||||| | || | ||||||||||||||||||||| |||||||||||    
T  24726 tgttgtgatgaatatgatttactttgatgattattgagagaatatt-atatattgtggatgatgatgatatgaagttgtaatgattgtatttgatgat 24822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 368 - 257
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatca-atgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| |||| || || || |  |||||||| | |||  |||| ||||||||||||||||||  ||||||||||| ||||||    
T  368 cagagaggatgaataagatgatt-aataatgatgatttactttgatgattatatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa 270  T
Q  110 tttttacatatga 122  Q
    || ||| ||||||    
T  269 ttgttatatatga 257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 4786 - 4675
Alignment:
Q  11 cagagaggatgactaagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttgtaa 109  Q
    |||||||||||| |||||||||| |||| || || || |  |||||||| || ||  |||| ||||||||||||||||||  ||||||||||| ||||||    
T  4786 cagagaggatgaataagatgatt-aataatgatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa 4688  T
Q  110 tttttacatatga 122  Q
    || ||| ||||||    
T  4687 ttgttatatatga 4675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 4736 - 4674
Alignment:
Q  207 aatgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgat 269  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| ||||    
T  4736 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgat 4674  T

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Target: scaffold0599; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 317 - 256
Alignment:
Q  208 atgtgagaagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgat 269  Q
    |||||| || ||||||| ||||||||||| ||||||||||| |||||||  |||||| ||||    
T  317 atgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgat 256  T

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Target: scaffold0375 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 9106 - 9150
Alignment:
Q  228 tgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  9106 tgtgaaagatgttgatatgaagttgtaatggttatattggatgat 9150  T

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Target: scaffold0061 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 15421 - 15503
Alignment:
Q  24 taagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttg 106  Q
    |||||||||| ||| |||||| || ||||||||||| || ||  |||| |||||||||||||||||  ||||||||||||||||    
T  15421 taagatgatt-aatgttgttgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaagttg 15503  T

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Target: scaffold0061; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 24479 - 24561
Alignment:
Q  24 taagatgatttaatattgttgtttaaagttgatgatcaa-tgcaaaaagatttatatattgtgaaagttgttgatatgaagttg 106  Q
    |||||||||| ||| |||||| || ||||||||||| || ||  |||| |||||||||||||||||  ||||||||||||||||    
T  24479 taagatgatt-aatgttgttgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaagttg 24561  T

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Target: scaffold0061; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 15439 - 15503
Alignment:
Q  189 tgatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttg 252  Q
    ||||||||||| || ||||| ||||| || ||||||| ||||||||| | |||||||||||||||    
T  15439 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaagttg 15503  T

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Target: scaffold0061; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 24497 - 24561
Alignment:
Q  189 tgatttaagttcattattaa-tgtgagaagatttataaattgtgaaagaagttgatatgaagttg 252  Q
    ||||||||||| || ||||| ||||| || ||||||| ||||||||| | |||||||||||||||    
T  24497 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaagttg 24561  T

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Target: scaffold0679 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 2468 - 2525
Alignment:
Q  215 aagatttataaattgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| ||||||||||| | | ||| |||||||||||| ||||||| ||||||    
T  2468 aagatttatatattgtgaaagatgctcataagaagttgtaatggttatattggatgat 2525  T

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Target: scaffold0509 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 9561 - 9606
Alignment:
Q  227 ttgtgaaagaagttgatatgaagttgtaatgattatatttgatgat 272  Q
    |||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  9561 ttgtgaaagatgttaatatgaagttgtaatggttatattggatgat 9606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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