View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0664_low_2 (Length: 576)
Name: NF0664_low_2
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 402
Target Start/End: Original strand, 38881616 - 38882009
Alignment:
| Q |
8 |
tcatcatgccatagacgcaagagcactaaagtgacaaagag-tttctggaaacagtgtctattgcgtgtatttttaatatcatggtgatatattatgtga |
106 |
Q |
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| T |
38881616 |
tcatcatgccatagacgcaagagcactaaagttacaaagaggtttctggaaacagtgtctattgcgtgtatgtttgacatcatggtgatatattatgtga |
38881715 |
T |
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| Q |
107 |
atattacgatgatttgattttatagaagctataaaatgtagtttttgnnnnnnntcacggcgtagtcacccagattctatcataccagccatgatatcac |
206 |
Q |
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| T |
38881716 |
atattacgatgatttgattttatagaagctataaaatgtagtttttaaaaaaaatcacggcgtagtcacccagattctatcataccagccatgatatgac |
38881815 |
T |
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| Q |
207 |
gcatatggtatatattactttgagtcggtttactaggctaactgaacaccgcattagaaggaagtatatgcgggtggaatattttgtttgtcgtgataag |
306 |
Q |
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| T |
38881816 |
gcatatggtatatattactttgagtcggttcacttggttaactgaacaccgcattagaaggaagtatatgcgggtggaatattttgtttgttgtggtaag |
38881915 |
T |
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| Q |
307 |
cttaaactcacatttatttcttgcatgtgtttttagttccttataaattgttgctactcccctccatctatttcgctcactcacacattaacactg |
402 |
Q |
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| T |
38881916 |
c-taaactcacatttatttcttgcatgtgtttttagttccttataaattgttgccact-ccctccatctatttcgctcactaacacattaacactg |
38882009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 463 - 567
Target Start/End: Original strand, 38882070 - 38882174
Alignment:
| Q |
463 |
actctctctggttagtttcacagtcccttttttctttatcatctctcatgtctcattccatgtatatatgcatcatggtttgatttattcttaacatatg |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882070 |
actctctctggttagtttcacagtcccttttttctttatcatctctcatgtctcattccatgtatatatgcatcatggtttgatttattcttaacatatg |
38882169 |
T |
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| Q |
563 |
tttta |
567 |
Q |
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||||| |
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| T |
38882170 |
tttta |
38882174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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