View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0664_low_20 (Length: 257)

Name: NF0664_low_20
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0664_low_20
NF0664_low_20
[»] chr3 (26 HSPs)
chr3 (31-208)||(31415399-31415576)
chr3 (66-208)||(31224669-31224811)
chr3 (132-257)||(18439864-18439988)
chr3 (64-208)||(15447713-15447854)
chr3 (88-255)||(12269552-12269718)
chr3 (64-203)||(11912921-11913060)
chr3 (64-165)||(6808175-6808276)
chr3 (180-257)||(49969934-49970011)
chr3 (165-257)||(20630147-20630238)
chr3 (117-223)||(1465423-1465529)
chr3 (64-205)||(49969965-49970106)
chr3 (118-214)||(49389644-49389740)
chr3 (209-257)||(6808230-6808278)
chr3 (209-257)||(11913014-11913062)
chr3 (211-257)||(31415497-31415543)
chr3 (209-257)||(15447711-15447759)
chr3 (213-257)||(31224669-31224713)
chr3 (64-131)||(20630193-20630259)
chr3 (72-205)||(49389772-49389906)
chr3 (180-219)||(14665631-14665670)
chr3 (64-131)||(18439943-18440009)
chr3 (93-139)||(40812050-40812096)
chr3 (182-223)||(4107286-4107327)
chr3 (182-223)||(4111138-4111179)
chr3 (182-223)||(16750477-16750518)
chr3 (196-228)||(12852440-12852472)
[»] chr6 (19 HSPs)
chr6 (64-257)||(27851148-27851341)
chr6 (64-257)||(25956570-25956762)
chr6 (64-208)||(20734160-20734304)
chr6 (64-189)||(22420981-22421106)
chr6 (64-189)||(2201133-2201258)
chr6 (64-154)||(34296982-34297072)
chr6 (180-257)||(19399851-19399928)
chr6 (66-139)||(19399822-19399895)
chr6 (209-257)||(20734158-20734206)
chr6 (209-257)||(22421060-22421108)
chr6 (64-205)||(25956717-25956857)
chr6 (209-257)||(2201212-2201260)
chr6 (209-257)||(27851295-27851343)
chr6 (209-257)||(34296980-34297028)
chr6 (72-139)||(18927888-18927954)
chr6 (64-123)||(31630623-31630681)
chr6 (210-257)||(31630622-31630668)
chr6 (182-223)||(16624506-16624547)
chr6 (64-129)||(27851129-27851193)
[»] chr7 (25 HSPs)
chr7 (31-208)||(38480232-38480409)
chr7 (66-208)||(30820971-30821113)
chr7 (66-208)||(36685965-36686107)
chr7 (64-189)||(9320442-9320567)
chr7 (64-189)||(11092751-11092876)
chr7 (132-257)||(17232601-17232725)
chr7 (64-189)||(11085013-11085138)
chr7 (64-203)||(15213699-15213838)
chr7 (132-257)||(8468407-8468524)
chr7 (117-223)||(9389709-9389815)
chr7 (64-170)||(15439318-15439424)
chr7 (209-257)||(11092830-11092878)
chr7 (209-257)||(15213792-15213840)
chr7 (211-257)||(38480330-38480376)
chr7 (64-205)||(8468312-8468452)
chr7 (209-257)||(9320440-9320488)
chr7 (209-257)||(11085092-11085140)
chr7 (213-257)||(36685965-36686009)
chr7 (64-131)||(14270140-14270206)
chr7 (213-256)||(30820971-30821014)
chr7 (64-131)||(45847736-45847802)
chr7 (64-205)||(17232506-17232646)
chr7 (207-257)||(14270136-14270185)
chr7 (210-257)||(45847735-45847781)
chr7 (196-228)||(18302175-18302207)
[»] chr4 (22 HSPs)
chr4 (64-257)||(13844519-13844711)
chr4 (88-257)||(46642814-46642982)
chr4 (64-208)||(33186097-33186241)
chr4 (64-183)||(15880717-15880836)
chr4 (117-223)||(15099351-15099457)
chr4 (209-257)||(15880790-15880838)
chr4 (209-257)||(33186195-33186243)
chr4 (72-204)||(35812211-35812342)
chr4 (64-123)||(362213-362271)
chr4 (180-255)||(15868765-15868838)
chr4 (64-131)||(52873253-52873319)
chr4 (117-181)||(15190360-15190424)
chr4 (72-139)||(9923361-9923427)
chr4 (72-139)||(11479432-11479498)
chr4 (207-257)||(52873249-52873298)
chr4 (180-229)||(13812865-13812914)
chr4 (210-257)||(362226-362272)
chr4 (64-131)||(13844498-13844564)
chr4 (210-257)||(13844665-13844712)
chr4 (72-111)||(14185252-14185291)
chr4 (226-257)||(14185253-14185284)
chr4 (64-139)||(46642785-46642859)
[»] scaffold0116 (3 HSPs)
scaffold0116 (64-257)||(43733-43925)
scaffold0116 (64-249)||(47653-47837)
scaffold0116 (64-205)||(43880-44020)
[»] chr1 (19 HSPs)
chr1 (64-257)||(28194398-28194590)
chr1 (72-257)||(43697353-43697537)
chr1 (64-208)||(51274301-51274445)
chr1 (117-223)||(49261342-49261448)
chr1 (119-223)||(20636851-20636955)
chr1 (64-143)||(8885457-8885536)
chr1 (64-166)||(12328568-12328670)
chr1 (117-223)||(35981700-35981806)
chr1 (72-142)||(51326904-51326974)
chr1 (209-257)||(8885490-8885538)
chr1 (209-257)||(51274299-51274347)
chr1 (209-257)||(12328566-12328614)
chr1 (64-131)||(28194545-28194611)
chr1 (64-131)||(43543069-43543135)
chr1 (207-257)||(43543090-43543139)
chr1 (182-223)||(39244030-39244071)
chr1 (182-223)||(39247585-39247626)
chr1 (182-223)||(41388135-41388176)
chr1 (64-131)||(46382653-46382717)
[»] chr5 (26 HSPs)
chr5 (64-257)||(5889125-5889316)
chr5 (64-208)||(12122234-12122378)
chr5 (66-208)||(21555094-21555236)
chr5 (66-208)||(21557760-21557902)
chr5 (66-207)||(31455686-31455830)
chr5 (64-189)||(24212382-24212507)
chr5 (64-203)||(36460170-36460309)
chr5 (66-207)||(31455073-31455217)
chr5 (64-189)||(35852637-35852762)
chr5 (65-208)||(30615751-30615893)
chr5 (129-223)||(21741557-21741651)
chr5 (86-208)||(17875209-17875331)
chr5 (192-257)||(29915150-29915214)
chr5 (209-257)||(12122232-12122280)
chr5 (209-257)||(24212461-24212509)
chr5 (209-257)||(35852716-35852764)
chr5 (209-257)||(36460263-36460311)
chr5 (213-256)||(31455174-31455217)
chr5 (213-256)||(31455787-31455830)
chr5 (64-205)||(5889271-5889411)
chr5 (213-257)||(21555094-21555138)
chr5 (213-257)||(21557760-21557804)
chr5 (180-255)||(21871627-21871700)
chr5 (180-255)||(21875907-21875980)
chr5 (68-131)||(29915173-29915235)
chr5 (212-257)||(30615849-30615893)
[»] scaffold0737 (2 HSPs)
scaffold0737 (64-208)||(6391-6535)
scaffold0737 (209-257)||(6389-6437)
[»] chr8 (20 HSPs)
chr8 (64-208)||(21579919-21580063)
chr8 (64-208)||(29763581-29763724)
chr8 (72-208)||(41680843-41680979)
chr8 (72-189)||(32807279-32807396)
chr8 (64-155)||(42560240-42560331)
chr8 (64-205)||(39833869-39834012)
chr8 (209-257)||(21579917-21579965)
chr8 (209-257)||(29763579-29763627)
chr8 (209-256)||(42560238-42560285)
chr8 (64-205)||(38550087-38550227)
chr8 (74-205)||(18760533-18760664)
chr8 (64-131)||(27472392-27472458)
chr8 (209-257)||(41680833-41680881)
chr8 (64-131)||(1327121-1327187)
chr8 (219-257)||(32807358-32807396)
chr8 (207-255)||(1327117-1327164)
chr8 (148-208)||(22965744-22965804)
chr8 (210-257)||(27472391-27472437)
chr8 (210-257)||(38550086-38550132)
chr8 (225-257)||(18760628-18760660)
[»] scaffold1351 (2 HSPs)
scaffold1351 (64-208)||(1561-1705)
scaffold1351 (209-257)||(1659-1707)
[»] scaffold0071 (2 HSPs)
scaffold0071 (64-208)||(14335-14479)
scaffold0071 (209-257)||(14433-14481)
[»] chr2 (15 HSPs)
chr2 (64-208)||(24865483-24865627)
chr2 (64-208)||(22500984-22501128)
chr2 (64-208)||(22508918-22509062)
chr2 (64-208)||(7672271-7672409)
chr2 (64-143)||(2524442-2524521)
chr2 (209-257)||(2524440-2524488)
chr2 (209-257)||(7672269-7672317)
chr2 (209-257)||(24865481-24865529)
chr2 (72-205)||(6576372-6576505)
chr2 (209-257)||(22501082-22501130)
chr2 (209-257)||(22509016-22509064)
chr2 (86-140)||(22501146-22501200)
chr2 (86-140)||(22509080-22509134)
chr2 (72-136)||(24436258-24436321)
chr2 (91-139)||(24883665-24883713)
[»] scaffold0009 (2 HSPs)
scaffold0009 (132-257)||(85228-85352)
scaffold0009 (64-131)||(85207-85273)
[»] scaffold0395 (2 HSPs)
scaffold0395 (64-208)||(10890-11034)
scaffold0395 (209-257)||(10988-11036)
[»] scaffold0815 (2 HSPs)
scaffold0815 (76-208)||(479-611)
scaffold0815 (225-257)||(577-609)
[»] scaffold0599 (4 HSPs)
scaffold0599 (64-203)||(4615-4754)
scaffold0599 (64-203)||(197-336)
scaffold0599 (209-257)||(4708-4756)
scaffold0599 (209-257)||(290-338)
[»] scaffold1137 (1 HSPs)
scaffold1137 (117-223)||(2304-2410)
[»] scaffold0434 (2 HSPs)
scaffold0434 (64-131)||(6772-6839)
scaffold0434 (209-257)||(6770-6818)
[»] scaffold0080 (1 HSPs)
scaffold0080 (72-204)||(59327-59458)
[»] scaffold0100 (2 HSPs)
scaffold0100 (64-139)||(36144-36218)
scaffold0100 (207-257)||(36140-36189)
[»] scaffold0061 (4 HSPs)
scaffold0061 (72-139)||(15448-15515)
scaffold0061 (72-139)||(24506-24573)
scaffold0061 (210-256)||(15439-15485)
scaffold0061 (210-256)||(24497-24543)
[»] scaffold0075 (1 HSPs)
scaffold0075 (180-255)||(8350-8423)
[»] scaffold0004 (2 HSPs)
scaffold0004 (64-131)||(362964-363030)
scaffold0004 (208-257)||(362985-363033)
[»] scaffold0810 (1 HSPs)
scaffold0810 (71-131)||(3004-3063)
[»] scaffold0001 (1 HSPs)
scaffold0001 (72-139)||(76954-77019)
[»] scaffold0513 (1 HSPs)
scaffold0513 (64-131)||(10965-11031)
[»] scaffold0335 (1 HSPs)
scaffold0335 (72-139)||(869-935)
[»] scaffold0221 (1 HSPs)
scaffold0221 (180-219)||(12864-12903)
[»] scaffold0192 (1 HSPs)
scaffold0192 (196-255)||(9851-9908)
[»] scaffold0142 (1 HSPs)
scaffold0142 (196-228)||(7720-7752)
[»] scaffold0124 (1 HSPs)
scaffold0124 (196-228)||(24726-24758)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 31415576 - 31415399
Alignment:
Q  31 gagatgaaccaagaagagagagagctgctgatcgatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaa 130  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  31415576 gagaagaaccaagaagagagagagctgctgatcgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa 31415477  T
Q  131 ttgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||||||||||||| || |||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||    
T  31415476 ttgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 31415399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 31224669 - 31224811
Alignment:
Q  66 tttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttactt 165  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||||    
T  31224669 tttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgactt 31224768  T
Q  166 gttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    | || ||||||||||||||||||||||||||||||||||||||    
T  31224769 gctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 31224811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 132 - 257
Target Start/End: Original strand, 18439864 - 18439988
Alignment:
Q  132 tgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaat 231  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  18439864 tgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgatt-aat 18439962  T
Q  232 gtgaaaatatttatatattgtgaaag 257  Q
    |||| ||||| |||||||||||||||    
T  18439963 gtgagaatatctatatattgtgaaag 18439988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 15447713 - 15447854
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||   || |||||||| |||| ||    
T  15447713 gatttactttgatgattaaatgtgaaaatattcatataatgtgaaagacgttgatatgaagttgtaattgttatatat---gattattattgatggtgac 15447809  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || ||||||||||||||||||||||||||||||||||||||    
T  15447810 ttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 15447854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 255
Target Start/End: Complemental strand, 12269718 - 12269552
Alignment:
Q  88 aaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgt 187  Q
    |||| ||||||||||||||||||  ||| ||||||| ||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||     
T  12269718 aaaagatttatatattgtgaaagttgttgatatgaagttgtattttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgc 12269619  T
Q  188 tgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaa 255  Q
    || ||||||||||| ||||||||||||||  ||||| ||| ||||||| || ||||||| ||| ||||    
T  12269618 tgccttgctgttgtcatgaatatgatttaagttgatgatt-aatgtgagaagatttataaattttgaa 12269552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 11913060 - 11912921
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||| || | ||    
T  11913060 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgattattattattgatgttgac 11912961  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtga 203  Q
    ||| || ||||  || |||| ||||| ||||| |||||||    
T  11912960 ttgatgcatattatttaatggtgttgccttgcggttgtga 11912921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 6808276 - 6808175
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |||||||| |||| ||    
T  6808276 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatataatgattattattgatggtgac 6808177  T
Q  164 tt 165  Q
    ||    
T  6808176 tt 6808175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 49969934 - 49970011
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49969934 aatgatgttgtcttcctgttgtgatgaatatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 49970011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 20630147 - 20630238
Alignment:
Q  165 tgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||| |||||||||||||||||||||    
T  20630147 tgttgtatatgtttaaatgatgttgtcttgctgttgtaatgaatatgatttactttgacgatt-aatgtgagaatatttatatattgtgaaag 20630238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 1465423 - 1465529
Alignment:
Q  117 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgattta 216  Q
    ||||||| ||| |||||||||| ||||||| ||||| || |||||||||| | ||||||||||||||||||||||||||||  ||||||||||||||| |    
T  1465423 atatgaagttgaaattgttatacatgaagattattaatgatggttacttgctctatatgtttaaatgatgttgtcttgctgccgtgatgaatatgattga 1465522  T
Q  217 ctttgat 223  Q
    |||||||    
T  1465523 ctttgat 1465529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 49969965 - 49970106
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||| ||||||| ||| || |||| ||| || | ||    
T  49969965 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaatggttatatttgatgattattgttgatgttgac 49970064  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    ||| || ||||  || |||| |  || |||||||||||||||    
T  49970065 ttgctgcatattatttaatggtactgccttgctgttgtgatg 49970106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 49389644 - 49389740
Alignment:
Q  118 tatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatt 214  Q
    |||||| ||| |||||||||| |||||||  ||||||  ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  49389644 tatgaagttgaaattgttatacatgaagatcattattaatgggtacttattgtatatgtttaaatgatgttgtcttgctgtcgtgatgaatatgatt 49389740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 6808278 - 6808230
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6808278 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 6808230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 11913062 - 11913014
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11913062 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 11913014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 31415543 - 31415497
Alignment:
Q  211 gatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  31415543 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 31415497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 15447711 - 15447759
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  15447711 atgatttactttgatgattaaatgtgaaaatattcatataatgtgaaag 15447759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 31224669 - 31224713
Alignment:
Q  213 tttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  31224669 tttactttgatgattaaatgtgaaaatatttatataatgtgaaag 31224713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 20630193 - 20630259
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    |||||||||||| |||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  20630193 gatttactttgacgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 20630259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 205
Target Start/End: Original strand, 49389772 - 49389906
Alignment:
Q  72 ttgatgattaaatgttaaaatattt--atatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttg 169  Q
    ||||||||||||||| |||||||||  |||||||||| |||  ||| ||||||| ||||||||||||||| ||| || |||| ||| || | ||||| ||    
T  49389772 ttgatgattaaatgtgaaaatatttagatatattgtg-aagttgttgatatgaagttgtaattgttatatttgatgattattgttgatgttgacttgctg 49389870  T
Q  170 tatatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    || ||  ||  ||| ||||| ||||||| |||||||    
T  49389871 taaattatttgatggtgttgccttgctgatgtgatg 49389906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 14665670 - 14665631
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactt 219  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  14665670 aatgatgttgttttgttgttgtgatgaatatgatttactt 14665631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 18439943 - 18440009
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | ||||| |||||||||||||||| | | ||||||| |||||||    
T  18439943 gatttactttgatgattaa-tgtgagaatatctatatattgtgaaagatgatgatatgaagttgtaat 18440009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 40812096 - 40812050
Alignment:
Q  93 atttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  40812096 atttatatattgtgaaagatgttgatatgaagttgtaatggttatat 40812050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 4107286 - 4107327
Alignment:
Q  182 tgatgttgtcttgctgttgtgatgaatatgatttactttgat 223  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  4107286 tgatgttattttgttgttgtgatgaatatgatttactttgat 4107327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 4111138 - 4111179
Alignment:
Q  182 tgatgttgtcttgctgttgtgatgaatatgatttactttgat 223  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  4111138 tgatgttattttgttgttgtgatgaatatgatttactttgat 4111179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 16750477 - 16750518
Alignment:
Q  182 tgatgttgtcttgctgttgtgatgaatatgatttactttgat 223  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  16750477 tgatgttattttgttgttgtgatgaatatgatttactttgat 16750518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 12852440 - 12852472
Alignment:
Q  196 tgttgtgatgaatatgatttactttgataatta 228  Q
    |||||||||||||||||||||||||||| ||||    
T  12852440 tgttgtgatgaatatgatttactttgatgatta 12852472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 64 - 257
Target Start/End: Complemental strand, 27851341 - 27851148
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaatt-gttatatatgaagaatattattggtggtta 162  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||    
T  27851341 gatttaccttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaagattattattgatggtta 27851242  T
Q  163 cttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||  || ||||||| |||||||||||||||||||||    
T  27851241 cttgttgtgtatgtttaaatgatgttgtcttgttgttgtgctgaatatgatttactttgatgctt-aatgtgagaatatttatatattgtgaaag 27851148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 64 - 257
Target Start/End: Original strand, 25956570 - 25956762
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||| ||||||||||||||| |||| || |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||    
T  25956570 gatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatggagttgcaaatgttatatatgaagattattattgatggttac 25956669  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  25956670 ttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatattgtgaaag 25956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 20734160 - 20734304
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||    
T  20734160 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgac 20734259  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || ||||||||||||| ||||||||||||||||||||||||    
T  20734260 ttgctgcatatgtttaaatggtgttgtcttgctgttgtgatgaat 20734304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 22421106 - 22420981
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| | || ||    
T  22421106 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatagtgac 22421007  T
Q  164 ttgttgtatatgtttaaatgatgttg 189  Q
    |||||| |||||| |||||| |||||    
T  22421006 ttgttgcatatgtctaaatggtgttg 22420981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 2201258 - 2201133
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||    
T  2201258 gatttactttgatgattaaatatgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgac 2201159  T
Q  164 ttgttgtatatgtttaaatgatgttg 189  Q
    ||| || |||||| |||||| |||||    
T  2201158 ttgctgcatatgtctaaatggtgttg 2201133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 34296982 - 34297072
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattatt 154  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||    
T  34296982 gatttactttgatgattagatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattatt 34297072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 19399928 - 19399851
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  19399928 aatgatgttgtcttactgttgtgatgaatatggtttactttgatgattaaatgtgaaaatatttatatattgtgaaag 19399851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 19399895 - 19399822
Alignment:
Q  66 tttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  19399895 tttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaatggttatat 19399822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 20734158 - 20734206
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20734158 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 20734206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 22421108 - 22421060
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22421108 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 22421060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 25956717 - 25956857
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| | | ||||||| ||||||| ||| ||| ||| || |||| ||| || | ||    
T  25956717 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgatgattattgttgatgatgac 25956815  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    ||| |||| ||  ||  ||||||||| ||||||| |||||||    
T  25956816 ttgctgtaaattatttgatgatgttgccttgctgatgtgatg 25956857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 2201260 - 2201212
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  2201260 atgatttactttgatgattaaatatgaaaatatttatatattgtgaaag 2201212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 27851343 - 27851295
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27851343 atgatttaccttgatgattaaatgtgaaaatatttatatattgtgaaag 27851295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 34296980 - 34297028
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  34296980 atgatttactttgatgattagatgtgaaaatatttatatattgtgaaag 34297028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 18927954 - 18927888
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||| |||  ||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  18927954 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaatggttatat 18927888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 31630623 - 31630681
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaa 123  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| |||||||    
T  31630623 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaa 31630681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 31630622 - 31630668
Alignment:
Q  210 tgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  31630622 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 31630668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 16624547 - 16624506
Alignment:
Q  182 tgatgttgtcttgctgttgtgatgaatatgatttactttgat 223  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  16624547 tgatgttattttgttgttgtgatgaatatgatttactttgat 16624506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 27851193 - 27851129
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgta 129  Q
    |||||||||||||| |||| ||| | |||||||||||||||||||||| | | ||||||| |||||    
T  27851193 gatttactttgatgcttaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgta 27851129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 38480409 - 38480232
Alignment:
Q  31 gagatgaaccaagaagagagagagctgctgatcgatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaa 130  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  38480409 gagaagaaccaagaagagagagagctgctgatcgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa 38480310  T
Q  131 ttgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||||||||||||| || |||||||| |||| ||||| || |||| |||||||||||||||||||||||||||||||||    
T  38480309 ttgttatatatgatgattattattgatggtgacttgctgcatatatttaaatgatgttgtcttgctgttgtgatgaat 38480232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 30820971 - 30821113
Alignment:
Q  66 tttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttactt 165  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||||    
T  30820971 tttactttgatgattaaatgtgaaaatatttatatattgtgaaatacgttgatatgaagttgtaattgttatatatgatgattattattgatggtaactt 30821070  T
Q  166 gttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    | || |||||||||||||||||||||||| |||||||||||||    
T  30821071 gctgcatatgtttaaatgatgttgtcttgttgttgtgatgaat 30821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 36685965 - 36686107
Alignment:
Q  66 tttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttactt 165  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| || |||||||||||||||| || |||||||| |||| ||||    
T  36685965 tttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgctgatatgaagttttaattgttatatatgatgattattattgatggtgactt 36686064  T
Q  166 gttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    | || ||||||||||||||||||||||||||||||||||||||    
T  36686065 gctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 36686107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 9320442 - 9320567
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||    
T  9320442 gatttattttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgac 9320541  T
Q  164 ttgttgtatatgtttaaatgatgttg 189  Q
    |||||| |||||| |||||| |||||    
T  9320542 ttgttgcatatgtctaaatggtgttg 9320567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 11092876 - 11092751
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||| |||| ||    
T  11092876 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaaattgtaattgttatatatgatgattattattgatggtgac 11092777  T
Q  164 ttgttgtatatgtttaaatgatgttg 189  Q
    |||||| ||| ||||||||| |||||    
T  11092776 ttgttgcatacgtttaaatggtgttg 11092751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 132 - 257
Target Start/End: Complemental strand, 17232725 - 17232601
Alignment:
Q  132 tgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaat 231  Q
    ||||| ||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| |||    
T  17232725 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgatgatgtcatgctgttgtgatgaatatgatttactttgatgatt-aat 17232627  T
Q  232 gtgaaaatatttatatattgtgaaag 257  Q
    |||| |||||||||||||||||||||    
T  17232626 gtgagaatatttatatattgtgaaag 17232601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 11085138 - 11085013
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||    
T  11085138 gatttactttgatgattaaatgtgaaactatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgac 11085039  T
Q  164 ttgttgtatatgtttaaatgatgttg 189  Q
    ||| || ||| | ||||||| |||||    
T  11085038 ttgctgcatacgattaaatggtgttg 11085013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 15213838 - 15213699
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||||| || | ||    
T  15213838 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacattgatatgaaattgtaattgttatatatgatgattattattgatgttgac 15213739  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtga 203  Q
    ||| || ||||  || |||| ||||| ||||| |||||||    
T  15213738 ttgctgcatattatttaatggtgttgccttgcggttgtga 15213699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 257
Target Start/End: Complemental strand, 8468524 - 8468407
Alignment:
Q  132 tgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaat 231  Q
    ||||| ||||||||| ||||| || |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||| |||    
T  8468524 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgat-------tgctgttgtgatgaatatgatttactttgatgatt-aat 8468433  T
Q  232 gtgaaaatatttatatattgtgaaag 257  Q
    |||| |||||||||||||||||||||    
T  8468432 gtgataatatttatatattgtgaaag 8468407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 9389709 - 9389815
Alignment:
Q  117 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgattta 216  Q
    ||||||| ||| ||||| |||| ||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  9389709 atatgaagttgaaattgatatacatgaagattattaatgatggttacttgctgtatatgtttaaatgatgttgtcttgctgtcgtgatgaatatgattga 9389808  T
Q  217 ctttgat 223  Q
    |||||||    
T  9389809 ctttgat 9389815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 15439424 - 15439318
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||| ||||||||||||||| |||| || ||||   ||||||||  ||| ||||||| |||||||||||||||||||||| |||||||| |||||||    
T  15439424 gatttacgttgatgattaaatgtgaaaagatctatactatgtgaaagttgttgatatgaagttgtaattgttatatatgaagattattattgatggttac 15439325  T
Q  164 ttgttgt 170  Q
    |||||||    
T  15439324 ttgttgt 15439318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 11092878 - 11092830
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11092878 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 11092830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 15213840 - 15213792
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15213840 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 15213792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 38480376 - 38480330
Alignment:
Q  211 gatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  38480376 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 38480330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 8468452 - 8468312
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| ||||||| ||| |||  || || |||| ||| || | ||    
T  8468452 gatttactttgatgattaa-tgtgataatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgattattgttgatgttgac 8468354  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    ||| |||| ||  || |||| ||||| ||||||| |||||||    
T  8468353 ttgctgtaaattatttaatggtgttgccttgctgatgtgatg 8468312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 9320440 - 9320488
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||    
T  9320440 atgatttattttgatgattaaatgtgaaaatatttatatattgtgaaag 9320488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 11085140 - 11085092
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  11085140 atgatttactttgatgattaaatgtgaaactatttatatattgtgaaag 11085092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 36685965 - 36686009
Alignment:
Q  213 tttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  36685965 tttactttgatgattaaatgtgaaaatatttatatattgtgaaag 36686009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 14270140 - 14270206
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  14270140 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 14270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 30820971 - 30821014
Alignment:
Q  213 tttactttgataattaaatgtgaaaatatttatatattgtgaaa 256  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  30820971 tttactttgatgattaaatgtgaaaatatttatatattgtgaaa 30821014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 45847736 - 45847802
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  45847736 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 45847802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 17232646 - 17232506
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| ||| ||| ||| |||  || || |||| ||| || | ||    
T  17232646 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttggaatggttgtattagatgattattgttgctgttgac 17232548  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    ||| |||||||  ||  ||| ||||| ||||||| |||||||    
T  17232547 ttgctgtatattatttgatggtgttgccttgctgatgtgatg 17232506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 14270136 - 14270185
Alignment:
Q  207 atatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  14270136 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 14270185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 45847735 - 45847781
Alignment:
Q  210 tgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  45847735 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 45847781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 18302207 - 18302175
Alignment:
Q  196 tgttgtgatgaatatgatttactttgataatta 228  Q
    |||||||||||||||||||||||||||| ||||    
T  18302207 tgttgtgatgaatatgatttactttgatgatta 18302175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 64 - 257
Target Start/End: Complemental strand, 13844711 - 13844519
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||| ||||||||||||||| ||||||| |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||    
T  13844711 gatttacgttgatgattaaatgtgaaaatatctatataatgtgaaagttgttgatatggagttgcaaatgttatatatgaagattattattgatggttac 13844612  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  13844611 ttgttgtatatgtttaaatgatgttgtcttactgttgtgatgaatatgatttactttgattatt-aatgtgagaatatttatatattgtgaaag 13844519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 46642982 - 46642814
Alignment:
Q  88 aaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgt 187  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  46642982 aaaagatttatatattgtgaaagttgttaatatgaagttgtaattgttacatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgc 46642883  T
Q  188 tgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    || |||||||||||||||||||||||||| |||||| ||| ||||||| || ||||||| | ||||||||    
T  46642882 tgccttgctgttgtgatgaatatgatttaatttgatgatt-aatgtgagaagatttataaactgtgaaag 46642814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 33186241 - 33186097
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||    
T  33186241 gatttactttgatgattaaatgtgaaaatatttatatattatgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgac 33186142  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || || ||||||||||||| ||||||| |||||||||||||    
T  33186141 ttgctgcatttgtttaaatgatgatgtcttgttgttgtgatgaat 33186097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 15880836 - 15880717
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||    
T  15880836 gatttactttgattattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgac 15880737  T
Q  164 ttgttgtatatgtttaaatg 183  Q
    ||| |  |||||| ||||||    
T  15880736 ttgctacatatgtctaaatg 15880717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 15099457 - 15099351
Alignment:
Q  117 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgattta 216  Q
    ||||||| ||| |||||||||| || |||| ||||| || |||||||||| |||||||||||||| |||||||||||||||| || |||||||||||| |    
T  15099457 atatgaagttgaaattgttatacataaagattattaatgatggttacttgctgtatatgtttaaaagatgttgtcttgctgtcgtaatgaatatgattga 15099358  T
Q  217 ctttgat 223  Q
    |||||||    
T  15099357 ctttgat 15099351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 15880838 - 15880790
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15880838 atgatttactttgattattaaatgtgaaaatatttatatattgtgaaag 15880790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 33186243 - 33186195
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  33186243 atgatttactttgatgattaaatgtgaaaatatttatatattatgaaag 33186195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 35812211 - 35812342
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgta 171  Q
    |||||||||||||||  ||  ||||||||||||||||||| ||| ||||||| ||||||| |||||||  || || |||| ||| || | ||||| || |    
T  35812211 ttgatgattaaatgtggaag-atttatatattgtgaaagatgttgatatgaagttgtaatggttatattggatgattattgttgatgttgacttgctgca 35812309  T
Q  172 tatgtttaaatgatgttgtcttgctgttgtgat 204  Q
    |||  |  |||||||||||||||||||||||||    
T  35812310 tattatctaatgatgttgtcttgctgttgtgat 35812342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 362271 - 362213
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaa 123  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||    
T  362271 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagacgttgatatgaa 362213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 15868765 - 15868838
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaa 255  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| ||| |||| || |||| ||||||||||||||    
T  15868765 aatgatgttgttttgttgttgtgatgaatatgatttactttgatgatt-aatgagagaata-ttatatattgtgaa 15868838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 52873253 - 52873319
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  52873253 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 52873319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 15190424 - 15190360
Alignment:
Q  117 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaa 181  Q
    ||||||| ||| |||||||||| ||||||| ||||| || |||||||||| ||||||||||||||    
T  15190424 atatgaagttgaaattgttatacatgaagattattaatgatggttacttgctgtatatgtttaaa 15190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 9923427 - 9923361
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||| |||  ||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  9923427 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaatggttatat 9923361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 11479432 - 11479498
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||| |||  ||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  11479432 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaatggttatat 11479498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 52873249 - 52873298
Alignment:
Q  207 atatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  52873249 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 52873298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 13812865 - 13812914
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaa 229  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||| |||||    
T  13812865 aatgatgttgttttgttgttgtgatgaatatgatttacttagatgattaa 13812914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 362272 - 362226
Alignment:
Q  210 tgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  362272 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 362226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 13844564 - 13844498
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||| ||||| ||| | |||||||||||||||||||||| | | ||||||| |||||||    
T  13844564 gatttactttgattattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 13844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 13844712 - 13844665
Alignment:
Q  210 tgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||| ||||| ||||||||||||||||| |||||| ||||||||    
T  13844712 tgatttacgttgatgattaaatgtgaaaatatctatataatgtgaaag 13844665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 14185291 - 14185252
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaaga 111  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  14185291 ttgatggttaaatgtgaaaatatttatatattgtgaaaga 14185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 14185284 - 14185253
Alignment:
Q  226 ttaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||||||||||||||||||||    
T  14185284 ttaaatgtgaaaatatttatatattgtgaaag 14185253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 46642859 - 46642785
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    |||||| |||||||||||| ||| | || ||||||| | ||||||||||||| ||||||| ||||||| |||||||    
T  46642859 gatttaatttgatgattaa-tgtgagaagatttataaactgtgaaagacgttgatatgaagttgtaatggttatat 46642785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 64 - 257
Target Start/End: Original strand, 43733 - 43925
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||| ||||||||||||||| |||| || |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||    
T  43733 gatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatggagttgcaaatgttatatatgaagattattattgatggttac 43832  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  43833 ttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatattgtgaaag 43925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 47653 - 47837
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||| ||||||||||||||| |||| || |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||    
T  47653 gatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaaatgttatatatgaagattattattgatggttac 47752  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  47753 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatat 47837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 43880 - 44020
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| | | ||||||| ||||||| ||| ||| ||| || |||| ||| || | ||    
T  43880 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgatgattattgttgatgatgac 43978  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    ||| |||| ||  ||  ||||||||| ||||||| |||||||    
T  43979 ttgctgtaaattatttgatgatgttgccttgctgatgtgatg 44020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 64 - 257
Target Start/End: Original strand, 28194398 - 28194590
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||| ||||||||||||||| |||| || |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||    
T  28194398 gatttacgttgatgattaaatgtgaaaaaatctatataatgtgaaagttgttgatatgtagttgcaaatgttatatatgaagattattattgatggttac 28194497  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  28194498 ttgctgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatattgtgaaag 28194590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 43697537 - 43697353
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgta 171  Q
    ||||||||||||||| |||| || |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||||| ||||    
T  43697537 ttgatgattaaatgtgaaaagatctatatagtgtgaaagttgttgatatggagttgcaaatgttatatatgaagattattattgttggttacttgctgta 43697438  T
Q  172 tatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||| | |||| ||||||||||||||    
T  43697437 tatgtttatatgatgctgtcttgctgttgtgataaatatgatttactttgatgatt-aatgtgagattattgatatattgtgaaag 43697353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 51274301 - 51274445
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || || |||||||| |||| ||    
T  51274301 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaattgttatataagatgattattattgatggtgac 51274400  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || ||||||||||||| | |||| ||| |||||||||||||    
T  51274401 ttgatgcatatgtttaaatgtttttgttttgttgttgtgatgaat 51274445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 49261448 - 49261342
Alignment:
Q  117 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgattta 216  Q
    ||||||| |||||||||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||    
T  49261448 atatgaagttgtaattgttatacatgaagattattattgatggttacttgttatatatgtttaaatgatactgtcttgctgtcgtgatgaatatgattta 49261349  T
Q  217 ctttgat 223  Q
    |||||||    
T  49261348 ctttgat 49261342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 20636955 - 20636851
Alignment:
Q  119 atgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttact 218  Q
    ||||| |||||||||||||| ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  20636955 atgaagttgtaattgttatacatgaatattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgctgtcgtgatgaatatgattttct 20636856  T
Q  219 ttgat 223  Q
    |||||    
T  20636855 ttgat 20636851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 8885536 - 8885457
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatga 143  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  8885536 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgtaatatatga 8885457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 12328568 - 12328670
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||||||| |||| ||    
T  12328568 gatttactttgatgattaaatttgaaaatatttatatattgtgaaagacgttgatatgaagatgtaattgttatatatgatgattattattgatggtgac 12328667  T
Q  164 ttg 166  Q
    |||    
T  12328668 ttg 12328670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 35981700 - 35981806
Alignment:
Q  117 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgattta 216  Q
    ||||||| ||| |||||||  | ||||||| || || || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  35981700 atatgaagttgaaattgttgcacatgaagattactaatgatggttacttgttgtatatgtttaaatgatgttgtcttgctgtcgtgatgaatatgattga 35981799  T
Q  217 ctttgat 223  Q
    |||||||    
T  35981800 ctttgat 35981806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 51326974 - 51326904
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatg 142  Q
    ||||||||||||||| || ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  51326974 ttgatgattaaatgtgaacatatttatatattatgaaagacgttgatatgaagttgtaattgttatatatg 51326904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 8885538 - 8885490
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8885538 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 8885490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 51274299 - 51274347
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51274299 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 51274347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 12328566 - 12328614
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  12328566 atgatttactttgatgattaaatttgaaaatatttatatattgtgaaag 12328614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 28194545 - 28194611
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  28194545 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 28194611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 43543135 - 43543069
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  43543135 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 43543069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 43543139 - 43543090
Alignment:
Q  207 atatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  43543139 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 43543090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 39244030 - 39244071
Alignment:
Q  182 tgatgttgtcttgctgttgtgatgaatatgatttactttgat 223  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  39244030 tgatgttattttgttgttgtgatgaatatgatttactttgat 39244071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 39247585 - 39247626
Alignment:
Q  182 tgatgttgtcttgctgttgtgatgaatatgatttactttgat 223  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  39247585 tgatgttattttgttgttgtgatgaatatgatttactttgat 39247626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 41388135 - 41388176
Alignment:
Q  182 tgatgttgtcttgctgttgtgatgaatatgatttactttgat 223  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  41388135 tgatgttattttgttgttgtgatgaatatgatttactttgat 41388176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 46382653 - 46382717
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | ||||||||||  |||||||||| ||| ||||||| |||||||    
T  46382653 gatttactttgatgattaa-tgtgagaatatttata--ttgtgaaagatgttgatatgaagttgtaat 46382717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 64 - 257
Target Start/End: Original strand, 5889125 - 5889316
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||| ||||||||||||||| |||| || |||||| ||||||||  ||| ||||| | ||| |||||||||| ||||||| |||||||| |||||||    
T  5889125 gatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaattgttatacatgaagattattattgatggttac 5889224  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  5889225 ttgctgtatatgtttaaatgatgttgtctt-ctgtcgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatattgtgaaag 5889316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 12122234 - 12122378
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||    
T  12122234 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgac 12122333  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    |||  | |||||||||||||||| |||||||||||||||||||||    
T  12122334 ttgcggcatatgtttaaatgatgatgtcttgctgttgtgatgaat 12122378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 21555094 - 21555236
Alignment:
Q  66 tttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttactt 165  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||| | || || ||||||||||||||||||| || |||||||| |||| ||||    
T  21555094 tttagtttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgacataaagttgtaattgttatatatgatgattattattgatggtgactt 21555193  T
Q  166 gttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    | || ||||||||||||||||||||||||||||||||||||||    
T  21555194 gctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 21555236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 21557760 - 21557902
Alignment:
Q  66 tttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttactt 165  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||| | || ||||    
T  21557760 tttagtttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatagtgactt 21557859  T
Q  166 gttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    | || ||||||||||||||||||||||||||||| ||||||||    
T  21557860 gctgcatatgtttaaatgatgttgtcttgctgttatgatgaat 21557902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 31455830 - 31455686
Alignment:
Q  66 tttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatga---agaatattattggtggtta 162  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||||| |||||| ||||    || |||||||| |||| |    
T  31455830 tttactttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatatgaagttgtaatcgttataaatgatattgattattattgatggtga 31455731  T
Q  163 cttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaa 207  Q
    |||| || |||||||||||||||||||||||||||||||||||||    
T  31455730 cttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaa 31455686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 24212507 - 24212382
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || || ||||| |||| ||    
T  24212507 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattaatattgatggtgac 24212408  T
Q  164 ttgttgtatatgtttaaatgatgttg 189  Q
    ||| || |||||| ||||||||||||    
T  24212407 ttgctgcatatgtctaaatgatgttg 24212382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 36460309 - 36460170
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||  || | ||    
T  36460309 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattaatgttgac 36460210  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtga 203  Q
    ||| || ||||  || |||| ||||||||||| |||||||    
T  36460209 ttgctgcatattatttaatggtgttgtcttgcggttgtga 36460170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 31455217 - 31455073
Alignment:
Q  66 tttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatga---agaatattattggtggtta 162  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| || ||||||| |||||| ||||    || |||||||| |||| |    
T  31455217 tttactttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatattaagttgtaatcgttataaatgatattgattattattgatggtga 31455118  T
Q  163 cttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaa 207  Q
    |||| || |||||||||||||||||||||||||||||||||||||    
T  31455117 cttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaa 31455073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 35852762 - 35852637
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || || |||||||| ||||  |    
T  35852762 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatacgatgattattattgatggtggc 35852663  T
Q  164 ttgttgtatatgtttaaatgatgttg 189  Q
    ||| || |||||| |||||| |||||    
T  35852662 ttgctgcatatgtctaaatggtgttg 35852637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 30615893 - 30615751
Alignment:
Q  65 atttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttact 164  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||  ||| || ||||| || |||| |||    
T  30615893 atttacttttatgattaaatgtgaaaatatt-atatattgtgaaagacgttgatatgaagttgtaattgttataattgatgattattaatgatggtgact 30615795  T
Q  165 tgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    || || ||||||||||| |||| ||||||||||||| |||||||    
T  30615794 tgctgcatatgtttaaacgatgatgtcttgctgttgcgatgaat 30615751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 21741557 - 21741651
Alignment:
Q  129 aattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgat 223  Q
    |||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||||    
T  21741557 aattgttatacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgttgtcttgctgtcgtgatgtatatgattgaatttgat 21741651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 17875331 - 17875209
Alignment:
Q  86 ttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgat 185  Q
    |||| ||||||||||| ||  ||||||||| ||||||| || |||||||||||||||| || |||||||| |||| ||||| || |||||||||||||||    
T  17875331 ttaagatatttatataatgataaagacgttgatatgaagttctaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgat 17875232  T
Q  186 gttgtcttgctgttgtgatgaat 208  Q
     || |||||||||||||| ||||    
T  17875231 attatcttgctgttgtgaagaat 17875209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 29915150 - 29915214
Alignment:
Q  192 ttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||    
T  29915150 ttgctgttgtgatgaatatgatctactttgatgatt-aatgtgagaatatttatatattgtgaaag 29915214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 12122232 - 12122280
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12122232 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 12122280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 24212509 - 24212461
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24212509 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 24212461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 35852764 - 35852716
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35852764 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 35852716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 36460311 - 36460263
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36460311 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 36460263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 31455217 - 31455174
Alignment:
Q  213 tttactttgataattaaatgtgaaaatatttatatattgtgaaa 256  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  31455217 tttactttgatgattaaatgtgaaaatatttatatattgtgaaa 31455174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 31455830 - 31455787
Alignment:
Q  213 tttactttgataattaaatgtgaaaatatttatatattgtgaaa 256  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  31455830 tttactttgatgattaaatgtgaaaatatttatatattgtgaaa 31455787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 5889271 - 5889411
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| | | ||||||| ||||||| ||| ||| ||| || |||| ||| || | ||    
T  5889271 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgatgattattgttgatgatgac 5889369  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    ||| |||| ||  ||  ||| ||||| ||||||| |||||||    
T  5889370 ttgctgtaaattatttgatggtgttgccttgctgatgtgatg 5889411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 21555094 - 21555138
Alignment:
Q  213 tttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  21555094 tttagtttgatgattaaatgtgaaaatatttatatattgtgaaag 21555138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 21557760 - 21557804
Alignment:
Q  213 tttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  21557760 tttagtttgatgattaaatgtgaaaatatttatatattgtgaaag 21557804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 21871627 - 21871700
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaa 255  Q
    ||||||| ||||||| |||||||||||||||||||||||||||  ||| |||| || |||| ||||||||||||||    
T  21871627 aatgatgctgtcttgttgttgtgatgaatatgatttactttgacgatt-aatgagagaata-ttatatattgtgaa 21871700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 21875907 - 21875980
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaa 255  Q
    ||||||| ||||||| |||||||||||||||||||||||||||  ||| |||| || |||| ||||||||||||||    
T  21875907 aatgatgctgtcttgttgttgtgatgaatatgatttactttgacgatt-aatgagagaata-ttatatattgtgaa 21875980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 29915173 - 29915235
Alignment:
Q  68 tactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  29915173 tactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 29915235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 30615893 - 30615849
Alignment:
Q  212 atttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||    
T  30615893 atttacttttatgattaaatgtgaaaata-ttatatattgtgaaag 30615849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 6391 - 6535
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||    
T  6391 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgac 6490  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || ||||||||||||| |||||||||||| |||||||||||    
T  6491 ttgctgcatatgtttaaatggtgttgtcttgctattgtgatgaat 6535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 6389 - 6437
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6389 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 6437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 21579919 - 21580063
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||  | |||||||| |||| ||    
T  21579919 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgataattattattgatggtgac 21580018  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || ||||||||||||||||||||||||||||||||||||||    
T  21580019 ttgctgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 21580063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 29763581 - 29763724
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||| | |||| |     
T  29763581 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattatcgatggtga- 29763679  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || |||||||||||||||| |||||||||||||||||||||    
T  29763680 ttgctgcatatgtttaaatgatgatgtcttgctgttgtgatgaat 29763724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 41680843 - 41680979
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgta 171  Q
    ||||||||||||||| ||||||||||||||||||||||||  || |||| |||||||||||||||||||||| || |||||||| |||| ||||| || |    
T  41680843 ttgatgattaaatgtgaaaatatttatatattgtgaaagatattgatatcaaattgtaattgttatatatgatgattattattgatggtgacttgctgca 41680942  T
Q  172 tatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    |||||||||||| || ||||||| |||||||||||||    
T  41680943 tatgtttaaatggtgatgtcttgttgttgtgatgaat 41680979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 32807396 - 32807279
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgta 171  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||||| || |    
T  32807396 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgca 32807297  T
Q  172 tatgtttaaatgatgttg 189  Q
    ||||| |||||| |||||    
T  32807296 tatgtctaaatggtgttg 32807279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 42560240 - 42560331
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattg 155  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||    
T  42560240 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaatacgttgatatgaaattgtaattgttatatatgatgattattattg 42560331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 39834012 - 39833869
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattg-ttatatatgaagaatattattggtggtta 162  Q
    ||||||| ||||||||||||||| |||| || ||||||  ||||| |  ||| ||||||| ||| || || ||||||||||||| |||||||| ||||||    
T  39834012 gatttacgttgatgattaaatgtgaaaagatctatataacgtgaatgttgttgatatgaagttgcaaatggttatatatgaagattattattgatggtta 39833913  T
Q  163 cttgttgtatatgtttaaatgatg-ttgtcttgctgttgtgatg 205  Q
    || | ||||||||||||||||||| ||| ||||||| |||||||    
T  39833912 ctcgctgtatatgtttaaatgatgattgccttgctgatgtgatg 39833869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 21579917 - 21579965
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21579917 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 21579965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 29763579 - 29763627
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29763579 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 29763627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 42560238 - 42560285
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaa 256  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42560238 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaa 42560285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 38550087 - 38550227
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| ||||||| ||| |||  || || |||| ||| || | ||    
T  38550087 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgattattgttgatgttgac 38550185  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    ||| |||| ||  ||  ||| ||||||||||||| |||||||    
T  38550186 ttgctgtaaattatttgatggtgttgtcttgctgatgtgatg 38550227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 18760664 - 18760533
Alignment:
Q  74 gatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtata 173  Q
    ||||||||||||| |||| ||||||||||||||||||| ||| ||||||| || |||| ||||||| ||| || |||| ||| || | ||||| || |||    
T  18760664 gatgattaaatgtgaaaagatttatatattgtgaaagatgttgatatgaagttataatggttatatttgatgattattgttgatgttgacttgctgcata 18760565  T
Q  174 tgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    |  || |||| || || |||||| ||||||||    
T  18760564 ttatttaatggtgatgccttgctattgtgatg 18760533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 27472392 - 27472458
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  27472392 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 27472458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 41680833 - 41680881
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  41680833 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaag 41680881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 1327121 - 1327187
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||| || ||| ||||||| |||||||    
T  1327121 gatttactttgatgattaa-tgtgagaatatttatatattgtgaacgatgttgatatgaagttgtaat 1327187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 32807396 - 32807358
Alignment:
Q  219 ttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  32807396 ttgatgattaaatgtgaaaatatttatatattgtgaaag 32807358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 1327117 - 1327164
Alignment:
Q  207 atatgatttactttgataattaaatgtgaaaatatttatatattgtgaa 255  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  1327117 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaa 1327164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 22965804 - 22965744
Alignment:
Q  148 tattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    |||||||| |||| | ||| || ||||||||||||| ||||||||||||||| ||||||||    
T  22965804 tattattgatggtgatttgatgcatatgtttaaatggtgttgtcttgctgttatgatgaat 22965744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 27472391 - 27472437
Alignment:
Q  210 tgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  27472391 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 27472437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 38550086 - 38550132
Alignment:
Q  210 tgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  38550086 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 38550132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 18760660 - 18760628
Alignment:
Q  225 attaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||| ||||||||||||||||||    
T  18760660 attaaatgtgaaaagatttatatattgtgaaag 18760628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 1705 - 1561
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| || || |||||||| |||| ||    
T  1705 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaattgttatataagatgattattattgatggtgac 1606  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || |||||||||||||||||||||||| |||||||||||||    
T  1605 ttgatgcatatgtttaaatgatgttgtcttgttgttgtgatgaat 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 1707 - 1659
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1707 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 1659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 14479 - 14335
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||| |||||||||||||||| || || |||||||| |||| ||    
T  14479 gatttactttgatgattaaatgtgaaaatattcatataatgtgaaagacgttgatatgaagttgtaattgttatataagatgattattattgatggtgac 14380  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || ||||||||||||||||||||||||||||||||||||||    
T  14379 ttgatgcatatgtttaaatgatgttgtcttgctgttgtgatgaat 14335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 14481 - 14433
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  14481 atgatttactttgatgattaaatgtgaaaatattcatataatgtgaaag 14433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 24865483 - 24865627
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || || |||||||| |||| ||    
T  24865483 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaattgttatataagatgattattattgatggtgac 24865582  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || |||||||||||||||||||||||||| |||||||||||    
T  24865583 ttgatgcatatgtttaaatgatgttgtcttgctattgtgatgaat 24865627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 22501128 - 22500984
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||| || || || ||||| |||| ||    
T  22501128 gatttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaattgttatataagatgattaatattgatggtaac 22501029  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || |||||||||||||||| ||||||||| |||||||||||    
T  22501028 ttgctgcatatgtttaaatgatgctgtcttgctattgtgatgaat 22500984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 22509062 - 22508918
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||| || || || ||||| |||| ||    
T  22509062 gatttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaattgttatataagatgattaatattgatggtaac 22508963  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || |||||||||||||||| ||||||||| |||||||||||    
T  22508962 ttgctgcatatgtttaaatgatgctgtcttgctattgtgatgaat 22508918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 7672271 - 7672409
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||      | |||||||||| || || |||||||| |||| ||    
T  7672271 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatga------agttgttatataagatgattattattgatggtgac 7672364  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || ||| |||||||||||| |||||||||||||||||||||    
T  7672365 ttgatgcatacgtttaaatgatgctgtcttgctgttgtgatgaat 7672409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 2524442 - 2524521
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatga 143  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  2524442 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatcaaattgtaattgttacatatga 2524521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 2524440 - 2524488
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2524440 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 2524488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 7672269 - 7672317
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7672269 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 7672317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 24865481 - 24865529
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24865481 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 24865529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 6576505 - 6576372
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgta 171  Q
    |||||||||||| || |||| ||||||||||||||||||| ||| ||||||| ||||||| ||||||| ||| || |||| ||| || | ||||| || |    
T  6576505 ttgatgattaaaagtgaaaaaatttatatattgtgaaagatgttgatatgaagttgtaatggttatatttgatgattattgttgatgttgacttgctgca 6576406  T
Q  172 tatgtttaaatgatgttgtcttgctgttgtgatg 205  Q
    |||  || |||| || || |||||| ||||||||    
T  6576405 tattatttaatggtgctgccttgctattgtgatg 6576372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 22501130 - 22501082
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  22501130 atgatttactttgatgattaaatgtgaaaatatttatataatgtgaaag 22501082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 22509064 - 22509016
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  22509064 atgatttactttgatgattaaatgtgaaaatatttatataatgtgaaag 22509016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 22501200 - 22501146
Alignment:
Q  86 ttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatata 140  Q
    |||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  22501200 ttaagatatttatataatgtgaaagacgttgatatgaagttgtaattgttatata 22501146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 22509134 - 22509080
Alignment:
Q  86 ttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatata 140  Q
    |||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  22509134 ttaagatatttatataatgtgaaagacgttgatatgaagttgtaattgttatata 22509080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 24436321 - 24436258
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgtta 136  Q
    ||||||||||||||| |||  ||||||||||||||||||| ||| ||||||||||||||| ||||    
T  24436321 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaaattgtaatggtta 24436258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 24883713 - 24883665
Alignment:
Q  91 atatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  24883713 atatttatatattgtgaaagatgttgatatgaagttgtaatggttatat 24883665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 132 - 257
Target Start/End: Complemental strand, 85352 - 85228
Alignment:
Q  132 tgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaat 231  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||    
T  85352 tgttatatatgaagattattattgatggttacttgatgtatatgtttaaatgaagttgtcttgctgttgtgatgaatatgatttactttgatgatt-aat 85254  T
Q  232 gtgaaaatatttatatattgtgaaag 257  Q
    |||| |||||||||||||||||||||    
T  85253 gtgagaatatttatatattgtgaaag 85228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 85273 - 85207
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  85273 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 85207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 11034 - 10890
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || |||||||| | || ||    
T  11034 gatttactatgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaatttttaattgttatatatgatgattattattgattgtgac 10935  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    ||| || ||||||||||||||||||||||||||||| ||||||||    
T  10934 ttgctgcatatgtttaaatgatgttgtcttgctgttttgatgaat 10890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 11036 - 10988
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  11036 atgatttactatgatgattaaatgtgaaaatatttatatattgtgaaag 10988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 611 - 479
Alignment:
Q  76 tgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatg 175  Q
    ||||||||||  |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |||||||| |||| ||||| || |||||    
T  611 tgattaaatgagaaaatatttatatattgtgaaagacgttgatatgaaattataattgttatatatgatgattattattgatggtgacttgctgcatatg 512  T
Q  176 tttaaatgatgttgtcttgctgttgtgatgaat 208  Q
    || ||||||||||||||||||||||||||||||    
T  511 ttaaaatgatgttgtcttgctgttgtgatgaat 479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 609 - 577
Alignment:
Q  225 attaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||| ||||||||||||||||||||||||    
T  609 attaaatgagaaaatatttatatattgtgaaag 577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 4754 - 4615
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||| || | ||    
T  4754 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgattattattattgatgttgac 4655  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtga 203  Q
    ||| || ||||  || |||| ||||| ||||| |||||||    
T  4654 ttgatgcatattatttaatggtgttgccttgcggttgtga 4615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 336 - 197
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttac 163  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||| || | ||    
T  336 gatttactttgatgattatatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgattattattattgatgttgac 237  T
Q  164 ttgttgtatatgtttaaatgatgttgtcttgctgttgtga 203  Q
    ||| || ||||  || |||| ||||| ||||| |||||||    
T  236 ttgatgcatattatttaatggtgttgccttgcggttgtga 197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 4756 - 4708
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4756 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 4708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 338 - 290
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  338 atgatttactttgatgattatatgtgaaaatatttatatattgtgaaag 290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 2304 - 2410
Alignment:
Q  117 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgattta 216  Q
    ||||||| ||| ||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |    
T  2304 atatgaagttgaaattgttgtacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgctgtcttgctgtcgtgatgaatatgattga 2403  T
Q  217 ctttgat 223  Q
    |||||||    
T  2404 ctttgat 2410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 6772 - 6839
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |||||||    
T  6772 gatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatggagttgtaat 6839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 6770 - 6818
Alignment:
Q  209 atgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6770 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaag 6818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 59327 - 59458
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgta 171  Q
    ||||||||||||||| |||  ||||||||||||||||||| ||| ||||||| |||||||||||||||  || || |||| ||| || | ||||| || |    
T  59327 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaattgttatattggatgattattgttgatgttgacttgctgca 59425  T
Q  172 tatgtttaaatgatgttgtcttgctgttgtgat 204  Q
    ||| ||| |||| ||||| |||||||| |||||    
T  59426 tattttttaatggtgttgccttgctgtcgtgat 59458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 36144 - 36218
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  36144 gatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaatggttatat 36218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 36140 - 36189
Alignment:
Q  207 atatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  36140 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaaag 36189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 15448 - 15515
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||| |||||||||||||||||||||| | ||| ||||||| |||  ||||||||||    
T  15448 ttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaagttgcgattgttatat 15515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 24506 - 24573
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||| |||||||||||||||||||||| | ||| ||||||| |||  ||||||||||    
T  24506 ttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaagttgcgattgttatat 24573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 15439 - 15485
Alignment:
Q  210 tgatttactttgataattaaatgtgaaaatatttatatattgtgaaa 256  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||    
T  15439 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaa 15485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 24497 - 24543
Alignment:
Q  210 tgatttactttgataattaaatgtgaaaatatttatatattgtgaaa 256  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||    
T  24497 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaa 24543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 8350 - 8423
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaa 255  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||| ||| |||| || |||| ||||||||||||||    
T  8350 aatgatgctgtcttgttgtcgtgatgaatatgatttactttgatgatt-aatgagagaata-ttatatattgtgaa 8423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 363030 - 362964
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||| ||||||| ||| ||||||| |||||||    
T  363030 gatttactttgatgattaa-tgtgagaatatttatatattttgaaagatgttgatatgaagttgtaat 362964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 363033 - 362985
Alignment:
Q  208 tatgatttactttgataattaaatgtgaaaatatttatatattgtgaaag 257  Q
    |||||||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  363033 tatgatttactttgatgattaa-tgtgagaatatttatatattttgaaag 362985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 3063 - 3004
Alignment:
Q  71 tttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    |||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||    
T  3063 tttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 3004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 77019 - 76954
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||  ||||||| ||||||| |||||||    
T  77019 ttgatgattaaatgtgaaaat--ttatatattgtgaaagatgtggatatgaagttgtaatggttatat 76954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 10965 - 11031
Alignment:
Q  64 gatttactttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaat 131  Q
    ||||||||||||||||| | ||| | |||||||||||||||| ||||| ||| ||||||| |||||||    
T  10965 gatttactttgatgattta-tgtgagaatatttatatattgtaaaagatgttgatatgaagttgtaat 11031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 935 - 869
Alignment:
Q  72 ttgatgattaaatgttaaaatatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 139  Q
    ||||||||||||||| |||  ||| ||||||||||||||| ||| ||||||| ||||||| |||||||    
T  935 ttgatgattaaatgtgaaag-attaatatattgtgaaagatgttgatatgaagttgtaatggttatat 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 12864 - 12903
Alignment:
Q  180 aatgatgttgtcttgctgttgtgatgaatatgatttactt 219  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  12864 aatgatgttgttttgttgttgtgatgaatatgatttactt 12903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 9908 - 9851
Alignment:
Q  196 tgttgtgatgaatatgatttactttgataattaaatgtgaaaatatttatatattgtgaa 255  Q
    |||||||||||||||||||||||||||| ||| |||| || |||| ||||||||||||||    
T  9908 tgttgtgatgaatatgatttactttgatgatt-aatgagagaata-ttatatattgtgaa 9851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 7720 - 7752
Alignment:
Q  196 tgttgtgatgaatatgatttactttgataatta 228  Q
    |||||||||||||||||||||||||||| ||||    
T  7720 tgttgtgatgaatatgatttactttgatgatta 7752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 24726 - 24758
Alignment:
Q  196 tgttgtgatgaatatgatttactttgataatta 228  Q
    |||||||||||||||||||||||||||| ||||    
T  24726 tgttgtgatgaatatgatttactttgatgatta 24758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 956 times since January 2019
Visitors: 4105