View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0664_low_22 (Length: 254)
Name: NF0664_low_22
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 35348572 - 35348804
Alignment:
| Q |
1 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatgtttcagcttgactaaaacaaacccttttcatgtgctcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35348572 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatttttcagcttgactaaaacaaacccttttcatgtgctcatt |
35348671 |
T |
|
| Q |
101 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35348672 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
35348771 |
T |
|
| Q |
201 |
tatgacatttagtgttctctccatttgatgatg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35348772 |
tatgacatttagtgttctctccatttgatgatg |
35348804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2275649 - 2275881
Alignment:
| Q |
1 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatgtttcagcttgactaaaacaaacccttttcatgtgctcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275649 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatttttcagcttgactaaaacaaacccttttcatgtgctcatt |
2275748 |
T |
|
| Q |
101 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275749 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
2275848 |
T |
|
| Q |
201 |
tatgacatttagtgttctctccatttgatgatg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2275849 |
tatgacatttagtgttctctccatttgatgatg |
2275881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39347140 - 39347372
Alignment:
| Q |
1 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatgtttcagcttgactaaaacaaacccttttcatgtgctcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39347140 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatttttcagcttgactaaaacaaacccttttcatgtgctcatt |
39347239 |
T |
|
| Q |
101 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39347240 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
39347339 |
T |
|
| Q |
201 |
tatgacatttagtgttctctccatttgatgatg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39347340 |
tatgacatttagtgttctctccatttgatgatg |
39347372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4012983 - 4013215
Alignment:
| Q |
1 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatgtttcagcttgactaaaacaaacccttttcatgtgctcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4012983 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatttttcagcttgactaaaacaaacccttttcatgtgctcatt |
4013082 |
T |
|
| Q |
101 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4013083 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
4013182 |
T |
|
| Q |
201 |
tatgacatttagtgttctctccatttgatgatg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4013183 |
tatgacatttagtgttctctccatttgatgatg |
4013215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 25879847 - 25880049
Alignment:
| Q |
1 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatgtttcagcttgactaaaacaaacccttttcatgtgctcatt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
25879847 |
ttcattgaacttgcactaatgaattgatgaatatatctcaaattgcacaggttaaatatgtttcagcttgactaaaagaaacccttttcatgtgcccatt |
25879946 |
T |
|
| Q |
101 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
25879947 |
ttaagacatatttcctatgaacttatgaaagaggaggtttgactaagtatttctctagaaaaaagtgaatgtgagtagtagtcatgatttttgaagaact |
25880046 |
T |
|
| Q |
201 |
tat |
203 |
Q |
| |
|
||| |
|
|
| T |
25880047 |
tat |
25880049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 25880077 - 25880105
Alignment:
| Q |
205 |
acatttagtgttctctccatttgatgatg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25880077 |
acatttagtgttctctccatttgatgatg |
25880105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 10789553 - 10789346
Alignment:
| Q |
1 |
ttcattgaacttgcagtaatgaattgatgaatatatctcaaattgcacaggttaaatatgtttcagcttgactaaaacaaacccttttcatgtgctcatt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
10789553 |
ttcattgaacttgcactaatgaattgatgaatatatctcaaattgcacaggttaaatatgtttcagcttgactaaaagaaacctttttcatgtgcccatt |
10789454 |
T |
|
| Q |
101 |
ttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttctctagaa-aaaagtgattgtgggtagtagtcatgatttttgaagaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10789453 |
ttaagacatatttcctatgaacttatgaaagaggaggtttgactaagtatttctctagaaaaaaagtgaatgtgggtagtagtcatgatttttgaagaac |
10789354 |
T |
|
| Q |
200 |
ttatgaca |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
10789353 |
ttatgaca |
10789346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 10789321 - 10789293
Alignment:
| Q |
205 |
acatttagtgttctctccatttgatgatg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10789321 |
acatttagtgttctctccatttgatgatg |
10789293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 807 times since January 2019
Visitors: 4101