View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0664_low_25 (Length: 252)
Name: NF0664_low_25
Description: NF0664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0664_low_25 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35348413 - 35348172
Alignment:
| Q |
1 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgnnnnnnntgaaatcatttctgccaaaacaatattcataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35348413 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgaaaaaaatgaaatcatttctgccaaaacaatattcataag |
35348314 |
T |
|
| Q |
101 |
ctaaacattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35348313 |
ctaaatattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
35348214 |
T |
|
| Q |
201 |
tactaattttaaaatcactactatatactacttcactctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35348213 |
tactaattttaaaatcactactatatactacttcactctctg |
35348172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2275471 - 2275230
Alignment:
| Q |
1 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgnnnnnnntgaaatcatttctgccaaaacaatattcataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2275471 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgaaaaaaatgaaatcatttctgccaaaacaatattcataag |
2275372 |
T |
|
| Q |
101 |
ctaaacattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
200 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2275371 |
ctaaatattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
2275272 |
T |
|
| Q |
201 |
tactaattttaaaatcactactatatactacttcactctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275271 |
tactaattttaaaatcactactatatactacttcactctctg |
2275230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39346961 - 39346720
Alignment:
| Q |
1 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgnnnnnnntgaaatcatttctgccaaaacaatattcataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
39346961 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgaaaaaaatgaaatcatttctgccaaaacaatattcataag |
39346862 |
T |
|
| Q |
101 |
ctaaacattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39346861 |
ctaaatattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
39346762 |
T |
|
| Q |
201 |
tactaattttaaaatcactactatatactacttcactctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39346761 |
tactaattttaaaatcactactatatactacttcactctctg |
39346720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4012805 - 4012564
Alignment:
| Q |
1 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgnnnnnnntgaaatcatttctgccaaaacaatattcataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4012805 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgaaaaaaatgaaatcatttctgccaaaacaatattcataag |
4012706 |
T |
|
| Q |
101 |
ctaaacattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4012705 |
ctaaatattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
4012606 |
T |
|
| Q |
201 |
tactaattttaaaatcactactatatactacttcactctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4012605 |
tactaattttaaaatcactactatatactacttcactctctg |
4012564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 25879673 - 25879434
Alignment:
| Q |
1 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgnnnnnnntgaaatcatttctgccaaaacaatattcataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| || |||||||||| |||||||| |||||||||| |
|
|
| T |
25879673 |
cagccatcacaattttgattgaaactacatta-tagatagtgtcggcataaccaacttt-aaaaaaatgcaatcatttctaccaaaacagtattcataag |
25879576 |
T |
|
| Q |
101 |
ctaaacattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
25879575 |
ctaaacattcagatcatatattttacctataaaaacaactttactttttaatattacacaaaagaatacaacttgctaaatgcaatgctatacttttcaa |
25879476 |
T |
|
| Q |
201 |
tactaattttaaaatcactactatatactacttcactctctg |
242 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25879475 |
tactaattttaaaatcactactgtatactacttcactctctg |
25879434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10789728 - 10789967
Alignment:
| Q |
1 |
cagccatcacaattttgattgaaactacatacctagatagtgccggcacaaccaactttgnnnnnnntgaaatcatttctgccaaaacaatattcataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
10789728 |
cagccatcacaattttgattgaaactacatta-tagatagtgccggcataaccaactttgaaaaaa-tgcaatcatttctgccaaaacaatattcataag |
10789825 |
T |
|
| Q |
101 |
ctaaacattcagatcatatattttacctataaaaacaactttactttttaatattacacataagaatacaactttctaaatgcaatgctatacttttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10789826 |
ctaaacattcagatcatatattttacctataaaaacaactttactttttaatattacacaaaagaatacaacttgctaaatgcaatgctatacttttcaa |
10789925 |
T |
|
| Q |
201 |
tactaattttaaaatcactactatatactacttcactctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10789926 |
tactaattttaaaatcactactatatactacttcactctctg |
10789967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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